Cajanus cajan (pigeon pea): 109802338
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Entry
109802338 CDS
T04868
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80 isoform X1
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
109802338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccaj03400
]
109802338
DNA repair and recombination proteins [BR:
ccaj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
109802338
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
PHA02142
Motif
Other DBs
NCBI-GeneID:
109802338
NCBI-ProteinID:
XP_020219252
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Position
7:13270105..13279569
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AA seq
685 aa
AA seq
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MARNKEALLLLLDVGPSMHSVLPEIEKVCSLLVQKKLIYNKYDEVGIVLFGTEDTDNELT
SEVGGYQHVVVLKDIKVVDGDIVEALQQLPRGKNDGDFLDAVIVAMDMLIKKFGETNKGK
KRMCLITNAQYPIKESYKGTKEEQVTTIAKQMTVHGMRMESIILRGKLSQDANKGIMDEN
DRLLNIFSKETSTRLLYVDNPISLFGALRTRNITPVTVFRGDIEFSPKLKIKVMVYKKTS
EEKFPSLKKYSDKAPPNDKHATRDVKVDYEYKSSEDPDKVVPPDRRIKGYPYGPQIVPIS
SAEWEAVKFKPEKGVKLLGFTESNNVLRHHYMKDVYAFLPEPGNTKAMLALSALARAMKE
MNKVAILRCVWRRGQSNVIIGVLTPNLSDRENIPDSFYLNVLPFAEDVREFQFPSFTNFP
ASWLPNELQLEAADNLIKTLDLAPHGQQEVLLPDFTPNPVLERFYRYLELKSKDPDAAVP
PLDDTLKKITEPDGDLLLQNRAVIGSFCRSFELKGNPLKKSRRLLGGKRSFSSVDVEGNI
TAQPANLIENASVKVEKIGDLTPVQDFEALISRRDGPDWVVKAINEMKNKIFDLVEDSHE
GDNYPKALECLVVLRKGCILEQEPKQFNDFLRHLCNFCREKKLNSFCDYLASEGLALIPK
TEAIDSEVTDDEARSFLVKSESKVV
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaacaaggaagcattgcttttgctgcttgatgtgggcccatccatgcattct
gttcttcctgaaattgagaaagtatgttccttgcttgtgcagaagaagctgatctataac
aaatatgatgaagtaggaatagtcttatttggaactgaagacactgacaatgaacttact
tcagaagtgggtgggtatcaacatgttgtggttttgaaagatattaaagttgtggatgga
gatattgttgaggctttgcaacaactgcctcgaggaaagaatgacggtgattttcttgat
gctgtcattgttgccatggatatgttgattaaaaaatttggagaaacaaacaagggaaag
aaacgtatgtgtcttattacaaatgcgcagtatccaataaaagaatcttataaaggaacg
aaggaagagcaagttaccaccattgctaaacaaatgaccgtccatggtatgaggatggaa
agtataattctgagaggaaagcttagtcaagatgcaaacaagggaataatggatgagaat
gatcgcctgttaaatattttttcaaaggaaacatcaacaagattgttgtatgtggacaat
ccaatttctttgtttggtgctcttagaacaagaaatataactccagttacagttttcagg
ggggatattgaattcagtccaaaacttaaaattaaggtaatggtgtacaagaaaacatca
gaagagaaatttccttctctaaagaaatattctgataaggctcctccaaatgataaacat
gctacacgtgatgtcaaggtagattatgagtacaagagttctgaagatcctgataaagtt
gtccccccagaccgaagaattaaaggttatccttatgggcctcaaatagttcccatatcc
tctgctgagtgggaggctgttaagttcaaaccggaaaaaggtgtgaagcttttgggattt
actgaatctaacaatgtacttagacaccattacatgaaagatgtatatgctttcctacct
gaacctggaaatacaaaagccatgcttgcactttctgcactagcaagggctatgaaggaa
atgaataaggtggcaatattacgttgtgtctggagacggggacaatcgaatgttatcatt
ggggtcttgacacccaatttatctgatagagaaaatattcccgattcattttacttaaat
gtactaccttttgccgaggatgttcgggaatttcaattcccttccttcactaatttccca
gcatcgtggcttccaaatgaactacagctagaggctgcagataacttaattaagacactt
gatcttgcaccacatgggcaacaggaagttttgctacctgactttacaccgaatccagtg
ttagagcgcttttatcgttatcttgagctgaaatcaaaggatcctgatgcagcagtacct
cctcttgatgacacactcaagaaaattacagagcctgatggtgacctgcttttgcaaaac
agagctgtaataggttcattttgtaggtcttttgagctaaagggaaatcccttgaaaaag
tcaaggcgtttgttgggaggaaagagatctttttcaagtgtagatgttgaaggaaacatt
actgctcaacctgccaatctcattgaaaatgcatctgttaaagttgagaaaatcggggac
ctgacccctgtccaagattttgaagcattgatttcacgcagagatggtcctgattgggtt
gtaaaagcgattaatgaaatgaaaaataaaatatttgacctggtggaggactcacatgaa
ggtgataactatcctaaagcattggagtgtttagttgtgcttcgcaagggttgtatcctt
gagcaggaaccaaaacaattcaacgatttccttagacatctatgtaatttctgtcgagag
aaaaagcttaatagtttctgtgactatcttgcttcagagggactcgcgttgatccccaaa
acagaagctatagacagtgaagttactgatgatgaagccagaagtttcttggttaaatct
gaatcaaaagttgtttga
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