Cajanus cajan (pigeon pea): 109802841
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Entry
109802841 CDS
T04868
Name
(RefSeq) uncharacterized ATP-dependent helicase C29A10.10c
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaj03021
]
109802841
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109802841
5.6.2.5 RNA 5'-3' helicase
109802841
Transcription machinery [BR:
ccaj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109802841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
AAA_19
UvrD_C_2
AAA_16
Motif
Other DBs
NCBI-GeneID:
109802841
NCBI-ProteinID:
XP_020219831
LinkDB
All DBs
Position
7:complement(4316933..4325455)
Genome browser
AA seq
1388 aa
AA seq
DB search
MGSRGRLLFDLNEPPAEDNDDRDNDREGIVCIQPQKMLPSTNPHASDLFATSTAAQGIIN
NHAFSHASSVSGFQPFVRPKSTGVPESDAESKRAGDQDAKVSSKSSKDEDVKVTDSRILS
LTNPQSMEREEGEWSDEEGFTNANGGNNANANGGNNLAQRSQASSEEPVTSGMVDGGVAV
ASDSKSRNIKSSDSINDEKSSHASIGVESNPSEQKSNSIPNSDSNVKSEASIDAQEEPTL
IPKQKEVKGIEASHALRCANNPGKRKIDQRKEEMLGKKRNRQTMFLNLEDVKQAGPIKTS
TPRRQTFSSPIISRTIKEVRTVPAQVERVGISKDHKLTDTSSGEGGNHAEAHEPKSDCNG
DTSGPLVRTRRLNSETEPSTESNLPPIPRQGSWKQLTDSRQQKNALHSNRKLGQSGQSSS
DIKLGNKKHLSIKKQTPISSQSQDTSVERLIREVTSEKFWHHPEETELQCVPGRFESVEE
YVRVFEPLLFEECRAQLYSTWEESTETVSRDTHIMVRVKANESRERGWYDVKVLPVHEFK
WSFKEGDVAILSSPRPGSVRSKQNSSSLAQDDGESEITGRVVGTVRRHIPIDTRDPPGAI
LHYYVGDSYDPSRVDDDHIIRKLQSGSIWYLTVLGSLATTQREYVALHAFRRLNLQMQTA
ILQPSPEHFPKYEQHTPTMPECFTQNFVEYLRRTFNEPQLAAIQWAAMHTAAGTSSGTTK
RQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKHVAPESYKLNDISSEHA
PTGSIDEVLQNMDQNLLRTLPKLVPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYR
PDVARVGVDSQTRAAQAVSVERRTEQLLVKTREEVMGWMHQLKNREAQLTQQLHCLHREL
NAAAAAVRSQGSVGVDPDLLIARDQNRDTLLQNLAAAVENRDKILVEMSRLALLESRFRP
GSGFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVL
PPLSLGAARCVLVGDPQQLPATVISKAAGTLMYSRSLFERFQQAGCPTMLLSVQYRMHPQ
IRDFPSRYFYQGRLTDSESVAKLPDEPYYKDPLLRPYLFYDIRHGRESHRGGSVSYQNIH
EAQFCLRLYEHVQKAVKSLGVGKITVGIITPYKLQLKCLQREFEEVLNSEEGKDIYINTV
DAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALVQSEDWAA
LINDAKSRNCYMDMDSLPKEFLVAKGPVYSSLPGKPASNMRGMRSGGPRYRSMDMHMESR
LGAPPSEDDDNMGAPPVGSRNGNHRPTRFSMENSLDDFDHGGDKSRDAWQYGIQKKQNSS
GTMGKRDV
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgggttctcgaggaaggctgttatttgatctcaatgagccacctgcagaggataatgat
gatagggataacgacagggagggtattgtctgtatccagccccaaaagatgctcccatca
accaatccccatgcgtctgacttatttgcaacatcaactgctgcccaaggaataataaat
aatcatgctttttcacatgcgtcatctgtctctggatttcaaccttttgttcggccaaaa
tccactggtgtccctgaatcggatgctgaatcaaagagagcaggagatcaagatgcaaag
gtttcctctaagtcaagtaaagatgaagatgttaaagttacagattcacggatattaagt
ttgacaaatcctcaatctatggagagggaagaaggggaatggtctgatgaggagggcttt
acaaatgctaatggaggtaataatgctaatgcaaatggaggcaataatttggcacagcga
agtcaagcatcatcagaagagcctgtaacatctggaatggtggatgggggtgttgcagtg
gcttctgacagtaagtctagaaatattaagagttctgatagtataaatgatgaaaagagt
agccatgcttctataggtgtagaatcaaatcctagtgaacagaaaagcaatagtattcca
aattcagatagcaatgtaaaaagtgaagcttctattgatgcacaggaggaacccacttta
attcccaagcaaaaagaagtgaaaggtattgaagcaagtcatgcacttaggtgtgcaaat
aatcctgggaagaggaagattgaccaacgtaaagaggaaatgttgggaaagaaacggaat
agacagaccatgtttcttaacttggaagatgtcaagcaagctggtcctattaaaacctca
acccctagaaggcagactttctcatcacccatcataagtcgtaccataaaggaagttcgc
actgttcctgcacaagttgagcgtgtcggaatatccaaggatcataagcttactgacaca
tcttctggtgaaggtggcaaccatgctgaagcacatgaaccaaaatctgattgtaatggt
gatacttctggaccacttgtcagaactaggaggctaaatagtgagacagaaccttctaca
gagtctaatttgccacctattccaagacagggttcttggaaacaactgacagattcaagg
cagcagaagaatgcactccattctaataggaagttgggacagagtggtcaaagctccagt
gatatcaaattaggaaacaagaaacatctttctatcaagaagcagactcctatcagcagc
cagtcccaggacacatctgttgaacgccttatacgggaggtgaccagtgaaaagttttgg
caccacccagaggagaccgagctacagtgtgttcctggacggtttgaatcagtggaagag
tatgttagagtatttgagcctttgctttttgaggaatgtcgggctcaactttacagtacc
tgggaagaatcaacagaaacagtgtcaagggatacacatattatggtgcgagtgaaggca
aatgagtcaagagaaagaggttggtatgatgtgaaagtccttccggtacacgagttcaaa
tggtcatttaaggagggtgatgttgcaatcctttcatcccctaggcctggatcagtcaga
tccaagcagaacagttcatctttagctcaggatgatggggaatcagaaatcactggacgt
gtggttggtactgttaggcgtcacatacccattgatactcgagatcctcctggtgcaatt
ctacattactatgttggagactcttatgatcctagcagggttgatgatgatcatatcata
aggaaactacaaagtggaagcatctggtatctcacagtgcttggttctcttgctaccaca
cagagggagtatgtcgcccttcatgcatttcgtcgcttaaatttgcagatgcaaactgca
atccttcagcctagtcccgaacacttccctaaatatgagcaacataccccaacgatgcct
gaatgcttcacacagaactttgttgagtatttgcgtaggaccttcaatgaaccccagttg
gctgcaatccaatgggcagcaatgcatacagctgctggtacaagtagtgggacaacaaag
aggcaagaaccctggccatttacccttgttcaaggacccccaggaacaggaaaaacacat
acagtatggggaatgttgaatgtcattcaccttgttcagtatcagcactactacacctct
ttacttaagcatgtagcacctgagagctacaagctcaatgatatcagttcagagcatgcc
cccactggttctattgatgaagttcttcaaaacatggaccagaatctcttacgaacttta
cctaaactggtcccaaaacctagaatgttagtttgtgctccgtctaatgctgccactgat
gagcttcttgctcgtgttcttgatcgtgggtttattgatggggagatgaaagtatatcga
cctgatgtagctagagttggggtcgattctcagacacgtgctgcccaagcagtttctgta
gagcgtagaactgaacagcttcttgtcaagactagggaagaagttatgggatggatgcac
cagttaaagaatcgtgaagcacagttgactcagcagttacattgtcttcacagagaacta
aatgctgctgctgctgctgttcgttctcaaggatctgttggtgttgatcctgaccttctt
atagcccgagatcagaatcgagatactttgctacagaaccttgctgctgctgttgaaaac
agggacaagattctggttgagatgtctcgccttgcccttctggaaagtaggttccgtcct
ggtagtggttttaatttggaagaggctcgggctagtttggaggccagttttgcaaatgaa
gccgagatagttttcacaacagtttctagcagtggccgcaagttgttttctcgtctttcc
catggttttgatatggtggtcattgatgaggcagcccaagccagtgaggttgcagttctg
cctcccctctctcttggtgccgcacgatgtgttcttgttggagatcctcagcagcttcct
gccaccgttataagcaaggcggctggaacattgatgtatagtaggagtctttttgaaagg
ttccaacaagcaggatgcccgacaatgttgttgtctgtgcaatatagaatgcatccccaa
attcgggatttcccttctaggtacttctatcaggggcgtcttactgatagtgaaagtgtg
gctaaattgcctgatgagccatactacaaagaccctttactaagaccttatttattctat
gatatcagacatgggcgtgagtctcacagaggtggatcagtatcttaccaaaacatacat
gaagcacaattttgtctccgactgtatgagcatgttcagaaagcagtgaagtctttgggc
gtaggaaagattactgttggcataataactccttataagctgcagttgaaatgcctccag
cgcgagtttgaggaagtcttaaattcagaagaagggaaggatatatatatcaacacagta
gatgccttccaaggtcaagaacgggatgtcattataatgtcttgtgtgcgtgcatccagt
catggggttggctttgttgcagatatacgacgaatgaatgttgcccttacgcgtgcacga
agggccctttgggtcatgggaaatgcaaatgctctggtgcaatctgaagattgggctgca
ttgatcaatgatgcaaaatctcgaaattgctatatggacatggactctcttcccaaggaa
tttcttgtggccaagggacctgtttactcatcattgcctggtaagcctgcctcaaatatg
aggggcatgagatcaggtggaccaagatatagatcaatggacatgcatatggaatccagg
ttgggtgcaccaccatctgaagatgatgataatatgggtgctcctccagttggctccaga
aatgggaaccatcgaccaacacggttttcaatggagaattccttggatgattttgatcat
gggggtgacaaatccagagatgcctggcagtatggtatacagaagaagcagaactcatct
ggaaccatgggaaagagagacgtataa
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