Cajanus cajan (pigeon pea): 109802994
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Entry
109802994 CDS
T04868
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
ccaj
Cajanus cajan (pigeon pea)
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaj03021
]
109802994
03036 Chromosome and associated proteins [BR:
ccaj03036
]
109802994
Transcription machinery [BR:
ccaj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
109802994
Chromosome and associated proteins [BR:
ccaj03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
109802994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HHH_9
HTH_44
SH2
HHH_3
Tex_N
Motif
Other DBs
NCBI-GeneID:
109802994
NCBI-ProteinID:
XP_020220029
LinkDB
All DBs
Position
7:9054700..9065117
Genome browser
AA seq
1651 aa
AA seq
DB search
MAKGVISDEEDDVELDEEEREPVEGDELDEGRDVDNEDEDEEEEGQDEYENDGFIVDDIE
DEDQDEEERAESDEERQRKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKG
RRDTEGEPSGLSDEEEFVGSGKVGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDA
DIGEDDEMADFIVDEEEVDENGAPMRQRKLKKKKTRQAPGVSSSALQEAQELFGDPDELI
LNRQKNLEMSEFRESRLEDEFEPIVLSEKYMTQKDDRIRELDIPERMQISEESTGAPPLD
ASSIDEESQWIVNQLGNGAVPWISKNVLNPQTNEMELPIDKDDIIRFLELHHVQKLDIPF
IAMYRKEECLSLLKDLEQLEAGDENWDKNDKTPSLKWHKVLWALQDLDKKWLLLQKRKSA
LQSYYSKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGE
AGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGCSPEQLGLCLSVVKLQELEDPKETPEE
MASNFTCAMYGTPEEVLKCARHMAAVEISCEPSIRKHVRSHFLDHAVVSTCPTADGNTTI
DSFHQFAGVKWLREKPLSKFGDVQWLLIQKAEEEKLIQVTIKLPEDYLNKLIDQFNEYYI
SDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARGVLASKAKNWLLMEYGKALWSKVS
VGPYQQKENDLGSDEEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTLRSQNV
NDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEM
DGLSIVYGDESLPRLYENSRISSDQLPSQQGIVRRAVALGRHLQNPLAMVATLCGPRKEI
LSWKLSPLESFLNPDDKFTMVEQVMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKA
ASLQRSLVRAGAIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRI
HPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYASEKKRQ
NKIQTFYDIKRELIQGFQDWRKQYEEPSQDEEFYMISGETEETLAEGKMVQVTVRRVQAQ
KAICGLESGMTGILMKEDYTDDWRDVIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDS
EMRSNRLQNNRDIDPYYHEDRSSVQSDQEKARKDKELAKKHFKPRMIVHPRFQNITADEA
MELLSDKDPGESIIRPSSRGPSHITLTLKITDGVYAHKDILEGGKEHRDITSLLRIGKTL
KIGEDTFEDLDEVMDRYVDPLVTHLKAMLNYRKFRKGTKTEVDELLKMEKAEYPMRIVYS
FGIAHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHD
SAPSIRSVAAMVPMRSPATGGSSGASVGSGWGGSNNEGGWRSHSYDRDRSSTPGSRTGRG
EYRNNGNRDEHPSGVPRPYGGGRGRGRGSYNNRGHNNNERQDSGYGGRWSSNNTKDADDG
LSNFPGAKVQNSPGREAFPGGWGGSGGSSGGSGWGGGGANNSDNGGWGGQGSGGAGPSDG
EQGSSGWGTGSKKPPPAAAADNGWGGNSGGW
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaggtgttatctccgacgaagaagacgatgtcgaactcgacgaggaagagagg
gagcccgttgagggcgacgaattggatgagggtcgcgatgtggacaacgaagacgaggac
gaagaagaggaagggcaggacgaatatgaaaatgacggatttatagtagatgacatagag
gatgaagatcaggatgaagaagagagagcagaaagtgatgaggagcgacagaggaagaaa
aagaggaagaaaaaggaggagtatgtccttgatgaagatgattatgagttgctagaggac
aataatatcaatattcatcggcggaaggagagcaaaaagtttaagcggctgaaaaaaggc
cggagggatactgaaggggagccctctgggctatctgatgaggaggagtttgttggaagt
ggtaaagttgggcgaactgctgaggagaagttaaaacgcagtttatttggtgatgatgaa
ggagccccacttgaagacattgctgaagaggaggagcaaggagaagaggaagaggatgct
gacattggagaagatgatgaaatggctgacttcattgtggatgaagaagaagttgatgag
aatggagctcctatgagacagaggaagctgaagaaaaagaaaactaggcaggcaccagga
gtctcttcctctgctctacaagaagctcaagaattatttggtgatccagatgagttgatt
ctgaatcgccagaaaaatctagaaatgagtgaatttagagagagtagacttgaagatgaa
tttgaacctattgttctttctgagaaatatatgacacagaaggatgacaggattagggag
cttgatattcctgagagaatgcagatatcagaggagagtactggtgctcctccgttggat
gcaagtagtattgatgaagagagtcagtggatagttaatcaacttggaaatggagcggtc
ccttggatttccaagaatgtccttaacccccaaactaatgaaatggaactaccaattgac
aaggatgatattatcagatttttggaactgcatcatgtgcaaaaattagatattccattt
attgctatgtatcggaaagaggagtgcttaagcctattgaaagacctagagcagctggag
gctggtgatgagaattgggataagaacgacaagacaccttctctgaaatggcacaaggtg
ctatgggctcttcaggacttggacaagaagtggttgcttcttcaaaagcggaagagtgcc
ctccagtcatactatagtaaacggtttgaagaagagtcccgtcgtgtgtatgatgagaca
agactaaacttgaatcgtcaattgtttgaatcagttatgagatcattgaaggaagcagaa
tctgagagggaggttgatgatgttgactccaagttcaacttgcatttcccaccaggcgaa
gctggtgttgatgaaggacaatacaagagaccaaaaaggaagtcaatgtatagcactttc
agcaaggcaggtctatgggaggttgcaagcaggttcgggtgtagtcctgagcaacttgga
ttatgtctatctgtagttaagttgcaagagttggaagatccaaaggaaacaccagaagag
atggcttctaacttcacgtgtgctatgtatggtacccctgaagaagtacttaaatgtgct
aggcacatggcagctgttgagataagttgtgagcctagcattaggaaacatgttcgtagc
cactttcttgaccatgcagttgtgtcaacttgtcctactgctgatggaaatacaacaata
gattctttccatcagtttgctggggtgaaatggctgcgggagaagcctttgtctaaattt
ggagatgtgcaatggctccttatacagaaggcagaagaggaaaaactcattcaagttact
attaagctgcctgaggattatcttaataagttaatagaccaattcaatgaatattatatc
agtgacagtgttagcagatctgctcaactgtggaatgaacagaggaagttaatattgcat
gatgccatttttcgattccttttaccatctatggaaaaagaggcaagaggtgtcttggca
agtaaagcaaagaattggttacttatggagtatggtaaggccttgtggagtaaggtttct
gtggggccatatcaacagaaggaaaatgatcttggttcagatgaagaggctgctcctagg
gttatggcgtgctgttggggccctggaaagccacaaacaacttttgttatgttagattca
tcaggagaagtgctagatgtgctttacactgggtctcttactttaaggtcacagaatgtt
aatgatcaacaacggaagaagaatgaccaagaacgtgtactgaagtttatgacagatcac
caaccacatgttgttgttttaggagcagttaacttgtcttgcactcgtttgaaggaagat
atatacgaggtcatttttaagatggtggaggaaaaccctagagatgttgggcacgaaatg
gatggtctcagcatcgtttatggggatgaatctcttccccgactttatgaaaattctcga
atttcctctgatcaacttccttcccagcaaggcattgtgagacgggctgttgcacttggg
cgtcatctccagaacccattggcaatggttgcgacattatgtggacctagaaaggaaatc
ttgtcatggaaactaagtcctttggagagtttcctcaacccagatgataaatttacaatg
gttgaacaggttatggtagatgtgaccaatcaggttggcttagacattaatttagcaata
agtcatgagtggttatttgctccattgcaatttatttctgggcttggtccacggaaggct
gcatccttacagagatccctggtaagagctggtgcaatttttactcggaaggactttttg
acagaacataaacttggtaaaaaggtgtttgtcaatgcggttggttttttgcgtgtccgg
cgaagtgggttggctgctagcagcagccaatttatcgatttgctggatgatacaagaatt
caccctgaatcttatattcttgcccaagagttggccaaagatgtgtatgaagaagatggc
acaggtgatgctaatgatgatgatgatgcgctggagatggccatagagcatgttagagac
cgacctagttatttgaaaaaccttgatgttgaggaatatgcttctgagaagaaacgtcag
aacaaaatacaaactttctatgacataaaaagagaattgattcaaggctttcaggattgg
cgtaagcaatatgaagaaccaagtcaggatgaggagttctatatgatttcaggtgagact
gaagagacccttgctgaaggcaaaatggttcaagtcacagttcgcagagtgcaagcccag
aaagcaatatgtgggcttgaatctggtatgactggaatcctcatgaaagaagactataca
gatgactggagagatgtaattgaattatctgataggctacatgaaggtgacatgctcact
tgtaaaatcaagtcaatccaaaagaataggtatcaagtcttccttgtttgtaaggatagt
gaaatgagaagtaatcgattacagaataaccgtgacattgacccctattaccatgaagac
cggagcagtgttcagagcgatcaagagaaagctcggaaagacaaggagcttgcaaagaag
catttcaagccaaggatgattgttcatccacgctttcagaacataactgcagatgaagca
atggagttattgtctgacaaagatcctggagaaagtataatccgtccgagttcccgagga
ccttcacatattactttaactcttaaaattactgatggagtatatgcccataaggatatc
cttgaaggtgggaaggaacacagggacattacaagtttactccgaattgggaagacactt
aaaattggagaggacacttttgaggacttagatgaggttatggaccgttacgttgatccc
ttggtgactcacttaaaggcaatgctaaactatcgcaaattccgaaagggtacaaaaaca
gaagttgatgaacttttgaagatggagaaagccgagtatcctatgcgcattgtctatagt
tttggcatcgcacacgagcatcccggcacatttatattaacttatataagaagtacaaat
ccacaccatgagtacatcggcctttacccgaaaggattcaggttcaggaaaaagatgttt
gaggacattgatcggcttgtggcatattttcagaggcatattgatgatccccagcatgat
tcggccccctccattagatccgttgctgctatggtaccaatgcgaagccctgctactggt
ggctcatctggggcatctgttggtagtggctggggtggttcaaacaatgagggtggctgg
agaagtcactcttatgatagggatcgatcatctacacctggttctaggacaggacggggt
gaatacagaaacaatgggaatcgggatgaacatcctagtggagtgcctcgtccatatggt
ggtggacgaggacgtggtcggggttcatacaacaatagaggacacaacaataatgaaagg
caggactctggttatgggggcagatggagttctaacaatacaaaagatgcggatgatggt
ttaagcaatttccctggggccaaggttcaaaattctcctggaagggaagcttttcctggt
ggttggggtggaagtggtggaagtagtggaggcagtggttggggaggaggtggagctaat
aacagtgataatggtggctggggtggacaggggagtggtggtgctggtccaagtgatggt
gaacaaggaagctctggctggggaactggctccaagaaaccaccaccagcagcagcagct
gataacggatggggtggaaattctggaggttggtga
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integrated database retrieval system
