Cajanus cajan (pigeon pea): 109803218
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Entry
109803218 CDS
T04868
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109803218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109803218
03012 Translation factors [BR:
ccaj03012
]
109803218
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109803218
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109803218
Translation factors [BR:
ccaj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109803218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
AAA_22
nSTAND3
Rad17
BEX
T2SSE
ABC_tran
Myosin_head
AAA_14
ATPase
NACHT
NPHP3_N
AAA_19
TsaE
PhoH
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
109803218
NCBI-ProteinID:
XP_020220282
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All DBs
Position
8:8958197..8963016
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AA seq
512 aa
AA seq
DB search
MPRCIFRPTLYSHNRLTFVHPPAPNLFPANPRIPTSVMAYRPNFQGGGRRGAASSAGRGG
GRRGGGGRGGGGGGRGGRGEQRWWDPVWRAERLRQQQAEKEVLDENEWWDKIEKMKSGGE
QEMVIKRNFSIADQKTLADMAYQHGLYFHAYSKGKALVVSKVPLPDYRADLDERHGSTQK
EIRMSTDIEKRVGNLLNSSQSVPQAATSSFPSVSAHLGHKQSATMIKSVSSEPTDSSKEK
LSVSLKERQELVQASDSLKEMKPFREKLPAFKMKSQFLKAVQENQVLVISGETGCGKTTQ
LPQFILEEEISSLRGADCNIMCTQPRRVSAISVAARISAERGESLGETVGYQIRLESKRS
AETRLLFCTTGVLLRQLVQDPYLTGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRL
ILMSATINADLFSKYFANAPTIHIPGFTFPVAEYFLEDVLEKTRYSIKSDFDNFEGNSRR
RRKQQDSKKDPLTEMFEACIYLTHQAMYLQSS
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgctgcattttccgccctactctctactcccataatcgcctcaccttcgtacac
ccgcccgcacccaatcttttccccgccaaccctcggattcccacttccgtcatggcctac
cgccccaacttccaaggcggcggccgcaggggcgccgcttcgtccgccggtcgcggcgga
ggccgccgtgggggcggcggacgcggtggaggaggaggcggccgcggtggacgcggcgag
caaagatggtgggaccctgtctggcgcgccgagcgtctcagacaacaacaagccgagaag
gaggtgttagatgagaatgagtggtgggataagatagagaagatgaaaagtggaggggag
caagaaatggtcattaagcgtaactttagtattgcagaccagaaaaccctagctgatatg
gcttaccagcatggactctactttcatgcttatagtaaggggaaggctctcgttgttagc
aaagttccgttgcctgattatcgtgcagatcttgatgagcgtcatggatcaacacagaag
gagattagaatgtccactgacattgagaagagagtaggaaatcttttgaatagctcacag
tcagtgccccaggcagcaacgtctagttttccttctgtatcagctcatctaggacataaa
caatctgcaaccatgataaaatctgtttcttcagaaccgacagattcttcgaaggagaaa
cttagtgtttcactcaaggaaaggcaggaacttgtacaggcaagtgatagtttgaaggaa
atgaaaccatttagggagaagcttcctgcgtttaaaatgaagtcccagtttctgaaagct
gttcaagaaaatcaggtattggtaatttcaggagagacaggttgtggtaaaacaacacag
ttgccacaattcattctggaagaagaaatatccagtttacgtggagctgattgcaacata
atgtgtactcagcctcgtcgagtgtctgcaatttctgttgcagctcgaatatctgctgaa
agaggtgagagtcttggggaaacagttgggtaccaaattcgtcttgaatcaaaacgttct
gcagaaacacgccttcttttctgcaccactggtgtattacttcggcagttggtgcaagac
ccgtacttgacaggtgttagtcatttgctggtggatgaaattcatgaaagaggcatgaat
gaagactttttaatcataattttacgtgaccttcttccacggcgtccagatttgcgtctt
attctgatgagtgctactattaatgctgatttattctctaaatactttgcaaatgcccca
acaatacacataccgggatttactttccctgtggcagagtacttcctagaagatgtgttg
gagaaaactcgatacagcatcaagtcagattttgacaattttgaggggaattcaaggaga
agaaggaaacaacaggattcaaagaaggatcccttgactgaaatgtttgaggcatgtata
tatttgacccatcaagctatgtatttacaatcttcatga
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