Cajanus cajan (pigeon pea): 109803285
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Entry
109803285 CDS
T04868
Name
(RefSeq) transcription initiation factor IIF subunit alpha
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109803285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaj03021
]
109803285
Transcription machinery [BR:
ccaj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
109803285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR
Motif
Other DBs
NCBI-GeneID:
109803285
NCBI-ProteinID:
XP_020220384
LinkDB
All DBs
Position
8:15352373..15359142
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AA seq
539 aa
AA seq
DB search
MSTDLQLKSSCSGCGSTTDLYGSNCKHMTLCLSCGKKMAENRAKCGDCGTTLTRLIREYN
VRASSTNDKNYFIARFATGLPDFSRKKSAENKWSLQKDGLHGRQITDTLREKYKNKPWLL
EDETGQSQYQGHLEGSQSATYYLLMKERKEFVAISAGSWYNFNKVAQYKQLTLEEAEEKM
KNRKKTADGYQRWMMKAANNGPAAFGEHGRFDDKESNTGGGKSRKKSGEDDEGHVSDKGE
EDEDEESDRKNRLGLNKRAGDDDEEGPRGGDHDLDDDDVEKGDDWEHEEIFTDDDEAVGN
DPEEREDLAPEVPAPPEIKQDEEEEDEDNEEGGGLSKSGKELKKLLGRASGMNESDAEDD
DDDDDDMDDEVGVPPVTATKQKDALKEEPVDNSPSKPTTTGSARGTPSSASKSSKGKRKS
NEDAKPSNGATPKKVKTENEPKSSAKDVNGSASKSSAPPKSTPSSSKPGSSTTASGPVSE
EEIRAVLRQKTPVTTQDLVAKFKARLRSSEDKQAFAEILKRISKIQKTNGSSYVILRDK
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggacctgcaattgaagtcgagttgtagcggatgcggatcaaccacggatctc
tacggaagcaattgcaagcacatgactctgtgcttgagctgcggcaaaaagatggcggag
aaccgcgccaaatgcggcgattgtggcaccaccctcactcgcttgattcgagaatataat
gttcgtgcaagttctaccaatgacaagaactactttatcgcgaggttcgctaccggtttg
cctgatttttcgaggaagaaaagtgctgagaacaagtggtctctgcagaaggatggactg
cacggacgccaaattactgatactttgcgagagaagtacaagaacaagccttggctcttg
gaggacgaaacgggtcagtcccagtaccagggtcatttagaaggttcacaatcggctaca
tattacctgctaatgaaggaaaggaaggagtttgtggctatttctgctggttcttggtac
aactttaacaaggttgctcaatataagcaattgacattggaggaagctgaagagaagatg
aagaatagaaagaaaactgcagatggatatcaaagatggatgatgaaagcagcaaataat
ggcccagctgcatttggtgaacatgggaggtttgatgacaaggaaagcaacacaggtgga
gggaaaagccgtaaaaaatctggtgaggatgacgaaggtcatgtctctgataagggtgag
gaggatgaagatgaggaatcagacaggaagaatagacttggccttaataaaagagctggt
gatgatgatgaagaaggtccaaggggaggggaccatgatctggatgatgacgatgttgag
aagggggatgattgggagcatgaagaaattttcactgatgacgatgaagctgttggcaat
gatcctgaagagagggaggatctggctcctgaagttcctgctcctcctgaaatcaagcag
gatgaagaggaggaggatgaagataatgaagaggggggaggtctgagtaaatctgggaaa
gagctaaagaagctgcttgggcgagctagtggtatgaatgaatctgatgcagaggatgac
gatgacgatgatgatgatatggatgatgaggttggtgttcctcctgtgactgctacaaag
caaaaggatgcccttaaggaagagcctgttgacaacagcccttcaaagccaactacaaca
ggatctgctcgtggaacaccttcttctgcttcaaagtcttcaaaggggaagagaaaatca
aacgaagatgcaaagccatctaatggtgcaacaccaaagaaggtgaagacagaaaatgaa
ccaaaatcatctgccaaggatgtaaatggatctgcatctaaaagtagtgcacctccaaaa
agtactccatcatcatcaaagcccgggtcttccacaactgcttctggacctgtgagtgaa
gaagaaattagagctgttttaaggcagaagactccagtgaccacacaggatcttgttgcc
aaatttaaggcaagactaagatcttcagaggataagcaagcatttgctgagatccttaag
agaatctcaaagatacagaagactaatggatccagttatgttatcctgagagataagtga
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