Cajanus cajan (pigeon pea): 109803406
Help
Entry
109803406 CDS
T04868
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109803406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109803406
03012 Translation factors [BR:
ccaj03012
]
109803406
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109803406
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109803406
Translation factors [BR:
ccaj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109803406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
T2SSE
AAA_16
Dicer_dimer
AAA_19
NPHP3_N
ATPase
PhoH
Motif
Other DBs
NCBI-GeneID:
109803406
NCBI-ProteinID:
XP_020220553
LinkDB
All DBs
Position
8:complement(1858848..1870896)
Genome browser
AA seq
1174 aa
AA seq
DB search
MPMAYSGIFQGFVRFKAMSRLRCTPLRPSLPSISATPFHRTAIRLRSCSAALHVINDTRH
RTVTLPFWHQRSSGYGRFAYQDVSSDDSDVELAPSHNQQVVDSTLENIDEWRWKLTMLLR
NNEEQEVVSREKKDRRDFEQLSTIATRMGLYSRQYARVVVFSKPPLPNYRPDLDDKRPQR
EVVLPFGIHKEVDSHLLAHLSQKATNRLGSLNDSLHRSSDAKSIPANEGMYEKPEPMTHN
SIVKEKILQRRSLQMRHQQHDWQESPEGQKMLEFRRSLPAFKEKDAFLRVMSENQVVVVS
GETGCGKTTQLPQYILESEIEAVSGAVCNIICTQPRRISAMSVSERVAAERGEKLGESVG
YKVRLEGLKGRDTRLLFCTTGVLLRRLLLDRSLKGVTHVIVDEIHERGMNEDFLLIVLKE
LLPRRPDLKLILMSATLNAELFSSYFNGAPTMHIPGFTFPVRAHFLENILERTGYRLTPY
NQIDDYGQEKTWKMQKQAQAFRKRKSQIASAVEDALEVADFKGYSLRTQDSLSCWYPDSI
GFNLIEHVLCHIVKNERPGAILVFMTGWDDINSLKDQLQAHPLLGDQSRVLLLACHGSMA
SSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVVDSGKAKETSYDALNNTPCLLPS
WISKASARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKTLQLG
SISEFLSRALQPPEPLSVQNAIDYLKIIGALDENENLTVLGHKLAMLPVEPKLGKMLILG
TIFKCLDPIMTVVAGLSVRDPFVMPSDKKDLAESAKAQFAARDYSDHLALIRAYEGWRDA
ETQQAGYEYCWRNFLSSQTLRAIDSLRKQFFYLLKDIGLVNNNSETYNTWSHEKHLLRAV
ICAGLFPGISSVVNKDKSIALKTMEDGQVLLYSSSVNGAVPRIPYPWLVFNEKVKVNSVF
LRDSTGISDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELAKTYLSLKMELEELIQR
KLLDPTLETQSHTELLSAVRLLVSEDHCDGRFVFGRQILQQLKKETNSKSGGVGGDNSKN
QLQTFLNRAGHESPTYKTRQLKNNQFRSTVIFNGLNFVGQPCSSKKLAEKSAAAEALLWL
KGDSHSSNDFDHASVLLKKSNKSRKKSFSGAKWS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgcctatggcatattcgggcatatttcagggcttcgtcagattcaaagccatgtctcgc
cttcgctgcactcctctcagaccttctcttccctccatttccgccactccctttcaccgc
actgccattcgcctccgctcctgctccgccgcgcttcacgtcatcaacgacacgcgccac
cggaccgtcacgttgccgttttggcaccagcgcagctccggctacggtcgttttgcctac
caggatgtgtccagtgacgattccgacgtcgaactcgcgccttctcacaaccaacaagtg
gttgattcgacgctcgagaacattgacgaatggagatggaagctgaccatgcttctgcgc
aacaacgaggaacaagaagtggtgtcaagagagaagaaggaccgtcgtgatttcgagcaa
ctttcgactatagctaccaggatgggtttgtatagccggcaatatgctagagttgttgtg
tttagcaagccgcctttgcctaattaccgccctgatctagatgataagcgtccacaaaga
gaggtagtcttaccatttggtattcataaagaagtagactctcatctccttgcccatctt
tcacaaaaggctacaaacaggttgggttctttgaatgattccttgcatagatccagtgat
gctaaaagcattccagccaatgaaggaatgtatgaaaagccagagcccatgacccataat
agtattgtcaaggagaaaatccttcaacgaagaagtttgcaaatgcgtcatcagcaacat
gattggcaggagtctcctgaagggcaaaagatgcttgaatttcgtagaagtctccctgca
ttcaaagagaaggatgcatttttgagagttatgtcagagaatcaggtcgttgttgtctca
ggtgaaactggttgtggtaagaccacacaacttcctcaatacatattagaatctgagatt
gaagctgtaagtggagctgtatgtaacataatatgtactcaacctagaagaatatcagct
atgtctgtttctgaaagagttgcagcagaacgtggagagaaattgggagaatctgttgga
tacaaagtccgtttggagggattgaaagggagggatactcggcttcttttttgtaccaca
ggtgttttattgcggagacttctcttggataggagtttaaaaggtgtaactcatgttatt
gttgatgaaattcacgaacgtggaatgaatgaagattttcttctaattgtcctgaaggaa
cttctccctcgtcgtcctgatttgaagttgattttgatgagtgcaacgttaaatgctgag
cttttttcttcatactttaatggtgctccaactatgcatattcctggttttacatttccg
gttcgagcacattttcttgagaatatactggaaaggactggatatcggttgacaccttat
aatcaaattgatgattatggtcaagaaaagacatggaaaatgcagaaacaagctcaagcg
ttcagaaaaagaaagagccagattgcttctgctgttgaggatgctttagaagttgctgac
tttaagggctatagcctacgcactcaagattcgttgtcctgctggtaccctgactcaatt
ggttttaaccttattgaacatgtgctttgccatattgttaagaatgaaagaccgggtgcc
attttggtttttatgaccggttgggatgatataaactcgttgaaggatcaactccaagct
catcctttgttgggtgatcagagccgagtattgcttcttgcatgccacggctccatggcc
agctctgagcagaggttgatatttgaaaatcctgaaggaggggtgaggaaaattgttctg
gcaactaacatggctgagactagtatcaccatcaatgatgttgtctttgtggttgactct
ggaaaagcaaaagaaacatcatatgacgcattaaataacactccttgtttgcttccatct
tggatctcaaaagcttctgctcggcagagaagaggaagggctggacgtgttcagcctggt
gaatgctaccatctttatccccgatgtgtctatgatgcttttgctgattatcaattgcca
gagcttttaagaacacctttgcagtccttatgtctgcaaatcaaaactctacaacttgga
agcatctctgagtttttatctagagctctacagccaccagagcctctatcggttcaaaat
gctattgattatttgaagatcattggggccttagacgagaatgaaaatttaacagtttta
gggcacaaattggcaatgcttcctgtagaacccaaacttggcaagatgctcattttggga
actatcttcaagtgtttggatcctataatgaccgttgttgctggtcttagtgtaagagat
ccatttgtaatgccatctgacaagaaggatcttgcagaatctgccaaagctcaatttgct
gctcgtgactacagtgatcatcttgcacttatccgggcttatgagggttggagagatgct
gaaacacagcaagcaggttacgagtactgttggcgaaattttctttcttcgcaaacactt
agggccattgactctcttcgaaagcaattcttttacttgctcaaagatattggtctggtt
aataacaattctgaaacctacaatacatggagtcatgaaaagcatctactccgagcagtc
atctgtgccggtttgtttccaggaatatcctctgttgtgaacaaagataagtcgatagca
ctgaaaacaatggaggatggtcaggttcttctgtattctagctctgtaaatggtgctgta
ccccgaattccatacccatggttagtgtttaatgaaaaggtgaaagtgaattcagtattc
cttagggattcaactggtatatctgattcggtgcttctcttatttggtgggaatgtatcc
agaggtggactagatggtcacctgaaaatgttgggagggtatttggagtttttcatgaaa
ccagaattagccaagacttacttaagcttaaagatggaactggaagaattgatacagaga
aaacttctggatcccacattggaaacacaatcgcatactgagctactttcagctgttaga
ttgttggtatcagaggaccattgtgatggtagatttgtgtttggtcgccagatcctacaa
caattgaagaaggaaacaaactccaaaagtggtggagttgggggtgataattctaaaaat
cagcttcaaacattccttaacagggctggacacgaatcaccaacttacaaaacaaggcag
ctgaaaaacaaccaattccgttctactgtcatattcaatgggttgaattttgttggtcag
ccatgcagcagcaaaaaattagccgaaaaatctgctgctgctgaggctcttctatggtta
aaaggggatagtcattcatctaatgattttgaccatgcatcagtgcttttgaaaaagagc
aacaaaagtaggaaaaaatcgtttagtggtgctaaatggagttga
DBGET
integrated database retrieval system
