Cajanus cajan (pigeon pea): 109803439 Help Entry 109803439         CDS       T04868                                  Name (RefSeq) THO complex subunit 2   KO K12879   THO complex subunit 2 Organism ccaj  Cajanus cajan (pigeon pea) Pathway ccaj03013   Nucleocytoplasmic transport ccaj03040   Spliceosome Brite KEGG Orthology (KO) [BR:ccaj00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     109803439   09122 Translation    03013 Nucleocytoplasmic transport     109803439  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ccaj03019]     109803439    03041 Spliceosome [BR:ccaj03041]     109803439 Messenger RNA biogenesis [BR:ccaj03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     TREX complex      109803439 Spliceosome [BR:ccaj03041]  Complex C   Other components    EJC/TREX     109803439  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     109803439 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Tho2 THOC2_N Thoc2 FapA LIM_bind COG4_N Motif Other DBs NCBI-GeneID:  109803439 NCBI-ProteinID:  XP_020220603 LinkDB All DBs Position 8:2075081..2098412 Genome browser AA seq 1872 aa AA seqDB search MSLPPIECVYVTEDYVREWRSGNPALKVSEPVPMLRFLYELCWTMVRGELPFQKCKVALD SVIFSDKASTEKIASNFADIVTQMAQDHTMSGEFRSRLVKLARWLVESEMVPVRLLQERC EEEFLGEAELIKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDSEAP TQKASAATIGIIKSLIGHFDLDPNRVFDIVLECFELQPDDGVFVELIPIFPKSHASQILG FKFQYYQRMEVNSPVPFGLYRLTALLVKQDFIDLDSIYTHLLPKDDEAFEHYNTFSSKRL DEANKIGRINLAATGKDLMDDEKQGDVNIDLFAALDMETDAIEERTTELQNSQTLGLLTG FLSVDDWYHARLLFERLSPLNAVEHIQICDSLFRLIEKSMSSAYDVIRQTHLQNPGSSTG GSTDVMDVDNSSGHDSFIDLPKDLFQMLACTGPYLYRDTVLLQKVCRVLRGYYLSALELV SHGEGALDTQLHFSGNPHLHLKEARLRVEDALGTCLLPSLQLIPANPAVGQGIWELMSLL PYEVRYRLYGEWEKDDERVPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANP MTVLRTIVYQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLALGGRDKLKDDGLNLS DWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTENL TEEQLDSMAGSETLRYQATSFGVTRNNKALIKSTSRLRDALLPKDEPKLAIPLLLLIAQH RSLVVINADAPYIKMLSEQFDRCHGTLLQYVEFLCSAVTPASNYAILIPSLNDLVHLYHL DPEVAFLIYRPVMRLFKSQRYPDVCWPLDDKNTASDASMNLESDPSDHSSSMVLNLGSAQ SPISWSYLLDTVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPKNRYESEIAKLHANLKS LEELSDNSSSAITKRKKEKERIQESLDRLISELHKHEENVASVHRRLSHEKDNWLSSCPD TLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMI CCCTEYEAGRLGRFLYETLKIAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFI KVHWKWSQRITRLLIQCLESSEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKSD EREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKPAPSVTKTSAGNSATVQSGINLN VSQTEPAGGKHADSGNPAKDQVIRTKNADGKSDRTESITATKSDSGHTKLKGGSMVNGLD APSSLPPSVQPGTSKSMENTKQVEESINRASDEHGTRIAESRTSAKRSVPAGSLSKSSKL DPIKEDGRSGKPVARSSGSSSSDKDLQTHASEGRHTVTTNVSSSVSANGNTISGSTKGSN PPAKISLDGPGNEPKAEVGVTKSSDIRASMVKDDGNDIADFTRGSSSRVVHSPRHENTGV TSKSNDKIQKRAGSAEEPDRLGKRRKGDVELRDFESEVRFSERDKPMDPRFADDKSGPDE HGLHRAGDKPLERPKDKGNERYEREHRERLDRLDKSRGDDFVAEKPRDRSIERYGRERSV ERMQERGNERSFNRLPEKAKDERSKDDRNKLRYNDVSVEKSHADDRFHGQSLPPPPPLPP NMVPQSVGAGRRDEDADRRYGATRHSQRLSPRHEEKERRRSEETVVSQDEAKRRKEDDFR DRKREEIKVEEREREREKSNILKEDLDLNAASKRRKLKREHLPTSEPGEYSPVAPPPPPP GIGMSVGYDGRDRGDRKGPIIQHPSYIDEPSLRIHGKEVASKLNRRDSDPLYDREWDDEK RQRADQKRRHRK NT seq 5619 nt NT seq  +upstreamnt  +downstreamnt atgtctcttccacccatagagtgtgtatacgttacagaggactatgttcgcgaatggagg agtggcaaccctgccctcaaggtttccgagcctgtcccaatgcttcgcttcctctacgag ctctgctggactatggttcggggtgaattgccgtttcagaagtgtaaagtagcgttagat tctgtcatattttcagataaagcttcgactgagaaaatagcttcaaattttgctgatata gtcacccagatggctcaagatcatacaatgtcaggagaattccgttctcgtcttgtcaaa ctggcaagatggcttgtggaatctgaaatggttccagttaggctacttcaagaacgttgt gaggaagaatttttgggggaggctgagttgatcaaaattaaggctcaagagttgaagggt aaagaggtccgagttaatacccgactcctatatcaacaaaccaaattcaaccttctcaga gaagagagtgagggctatgcaaagctggttactcttctttgtcgggactctgaagcacct actcaaaaagcatctgctgcaacaattggcattattaagtcattaatcggccattttgat ttggacccaaatcgcgtttttgatattgttcttgagtgttttgaactgcagcctgatgat ggcgtgtttgttgagttgattcctatttttccaaagtctcatgcttcacagattcttgga tttaaatttcaatattatcagcgcatggaagtcaacagtcctgttccatttgggctctat agacttacagccctgctggtgaagcaagattttattgatcttgatagcatatatactcat ctacttcccaaggatgatgaggcatttgagcattacaatacattctcttccaagcgcctt gacgaggctaataaaattggaagaataaaccttgctgcaaccggaaaagatctaatggat gatgagaaacagggggatgtcaatatagatctctttgctgctttagacatggaaacagat gcaattgaagagcgaacaactgaacttcaaaacagtcagactttgggcctacttactggc tttctttcagtagatgactggtatcatgcacgtcttctatttgaacgcctttcaccgctc aatgcagtggaacatattcaaatttgtgacagtttgtttaggcttatcgagaagtcaatg tcttcagcatatgatgttattcgccagacacatcttcaaaatcctggatcgtccacaggt ggtagcactgatgttatggatgtagacaactcttcaggacacgattctttcatagacctt ccaaaggacctttttcagatgcttgcttgtactggaccttatctctaccgtgatactgta ctgttgcagaaggtttgtagggtgttgagaggttattacctttctgctcttgagcttgta agtcatggtgaaggtgccttggatactcaattacatttttctggaaatcctcacctacat cttaaggaggcaaggctaagggtggaggatgctttaggaacatgtctactgccttctctg cagttaattcctgcaaatccagctgttggccagggaatttgggaactaatgagtctcctc ccttatgaggtgcgatatcgtttgtatggtgaatgggaaaaagatgatgaacgcgttcct atgctcttagctgcaagacaaacggccaagttggacaccagacgtattttaaaacggttg gcaaaggaaaatttgaagcagctgggtcggatggttgcaaaactagctcatgccaatcct atgactgtccttcgaacaattgtttatcagattgaggcttacagagacatgattactcct gtagtggatgcatttaagtacttaactcagcttgagtatgatatattagaatatgtcgtg attgagcgcttggcacttggaggacgtgacaagttaaaggatgatggcctcaatttgtcg gactggcttcaatctctagcttcattttggggtcacctgtgtaagaagtacccatcaatg gaattaaggggcctcttccagtatctcgttaaccagttaaaaaaggggcagggaattgag cttgttctactgcaggagcttattcaacaaatggcaaatgtccagtacactgagaacttg actgaggaacagctggattcaatggcagggagtgagactctcagatatcaagcaacatct tttggtgttactcggaataataaggcattgataaagtcaactagcagacttagagatgca ttacttccaaaagatgaaccaaagttggcgatacccctgttactccttattgctcaacat cgttctctggttgtcatcaatgcagatgccccctacattaaaatgcttagtgagcagttt gatagatgtcatggaactctccttcaatacgtggaatttctttgcagtgcagtcacacca gcatcaaattatgccattcttattccctccctcaatgacctggtccacctttaccacctg gaccctgaggttgcgttcttgatataccgccctgtaatgaggcttttcaagtctcagagg tatcctgatgtttgctggcccttggatgataaaaatactgcaagtgatgcatctatgaat ttggagtctgatccttcggatcattcttctagtatggttctaaatcttggctctgctcaa agtcctatcagttggtcatatcttcttgatactgtcaaaacgatgttaccttcaaaagca tggaatagtctatctcctgatctctatgcgacattttggggtcttacattatatgatctg tatgttccaaaaaatcgttatgagtcagaaatagccaagctgcatgctaatcttaaatct ttggaggagctttctgacaattcaagctcagcaatcacaaagaggaagaaagaaaaggaa agaattcaagaatctcttgatcgtctgattagtgaactgcataaacatgaagagaatgtt gcatctgttcatagacggctttctcatgaaaaagacaactggttaagttcctgtcctgac accttgaagatcaacatggagtttcttcagcgttgtatatttccacgctgtactttcagt atgcccgacgctgtttattgtgctatgtttgtacacacacttcattccctaggaaccccc ttttttaacacagtcaaccacatagatgttctgatttgtaagacccttcaaccaatgata tgctgctgcactgaatatgaggctggcaggcttggcaggtttctgtatgagactttgaag attgcttaccattggaagagtgatgaatctatttatgaacgtgagtgtggcaacatgcca ggctttgccgtttattatagatatccaaatagccagcgagttacctatgggcaattcatt aaggtacactggaagtggagtcaaagaatcacacggttattaattcagtgtctggaatct agtgagtacatggaaataagaaatgctcttataatgttgacaaaaatttctagtgttttc cctgttactcggaagagtgggataaaccttgaaaaacgggtagctaagattaaaagtgat gaaagagaggatcttaaggtgttggcaactggtgtcgctgcagctttggctgctaggaag ccttcttgggttactgatgaagaatttggtatgggttatcttgagttaaaacctgcacca tctgtgactaaaacttctgctgggaattcagcaaccgtacaaagtgggataaatctcaat gtttcacagactgaacctgccggtggaaagcatgcagactctggaaacccagctaaagat caggtaataagaacaaaaaatgctgatggcaagtcagacagaaccgaaagcattacagca acaaaatctgattctggccacacaaaactcaagggtggttcaatggttaatggattggat gctccatcatccttgcctccttctgtacaacctgggacgtcaaaatctatggaaaacaca aagcaagtggaagaatccataaatagagcatcagatgaacatgggacaagaattgctgag tcgagaacttcagcaaaacgttcagtgcctgctggttcactttcaaagtcctcaaaacta gatcccataaaagaggatggtagatctggaaaacctgttgctagatcttctggttcctca agcagcgacaaggatctacaaacccatgcgtcagagggaagacacactgtaactactaat gtatcttcttcagtcagtgctaatggtaacaccatttcaggttctacaaaaggttcaaat ccaccagcaaagatttcattggatggtcctggtaatgaaccaaaggcagaggttggagtt accaagtcttctgatattagggcttctatggtgaaggatgatggaaatgatattgctgac ttcacaagaggatcctcttctcgggtagttcattcccctaggcatgaaaatacaggtgtt acttcaaagtctaatgataaaattcagaagagagctggttctgctgaagaaccagacaga ctaggtaaacgacggaaaggggatgtggagctaagagattttgaaagtgaagttcgattc tctgaaagagataagcccatggatcctcgatttgctgatgacaaatcaggaccagatgag catggtctgcacagggcaggtgacaagccattggaaaggccaaaagacaaaggcaacgaa agatatgaaagggaacacagggaaagattggaccgcctggataagtctcgtggtgatgac tttgttgcagaaaaacctagggataggtcaattgaaagatatggaagagaacgatctgtt gagagaatgcaagaaaggggtaatgagaggagttttaatagactccctgagaaagctaag gatgaaagaagcaaggatgatagaaataaattacgatacaatgatgtatcagtagaaaaa tctcatgctgatgatcgcttccatggacaaagcttgcctccaccaccccctttacctcct aatatggttcctcaatctgtgggagctggtaggcgtgatgaagatgctgataggaggtat ggagctacaaggcactctcaaagactttctccaaggcatgaagaaaaagaaaggagacgg tctgaagagactgtggtttctcaggatgaagccaagcgccgaaaagaagatgattttcga gatcgaaaacgtgaggaaattaaggtggaagagagggagagggaaagggagaaatcaaac attctaaaggaagacttggatttaaatgccgcttccaagagacgcaaacttaaaagggag catctaccaaccagtgaacccggcgagtactcaccagtggcccctccacctcctccccct ggtattggtatgtctgtagggtatgatggaagggatagaggagacagaaaaggaccaatc atccagcatccaagttacatagatgaaccaagtctcaggattcacggtaaagaggtggcc agcaagttgaatcgtcgtgattctgatcccttgtatgaccgcgaatgggatgatgagaag aggcaaagagctgatcaaaagcgaaggcaccgaaagtaa

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