Cajanus cajan (pigeon pea): 109803534 Help Entry 109803534         CDS       T04868                                  Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism ccaj  Cajanus cajan (pigeon pea) Pathway ccaj03040   Spliceosome Brite KEGG Orthology (KO) [BR:ccaj00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     109803534  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ccaj03019]     109803534    03041 Spliceosome [BR:ccaj03041]     109803534 Messenger RNA biogenesis [BR:ccaj03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      109803534 Spliceosome [BR:ccaj03041]  Complex B   Other components    Prp19-related factors     109803534  Complex C     109803534 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 Suf Mad3_BUB1_I TPR_15 TPR_19 ARM_TT21 ARM_TT21_C NRDE-2 UTP6_C Motif Other DBs NCBI-GeneID:  109803534 NCBI-ProteinID:  XP_020220738 LinkDB All DBs Position 8:18278744..18285295 Genome browser AA seq 917 aa AA seqDB search MSISQDLYPSEDDLIYEEELLRNPFSLKLWWRYLVARSEAPFKKRFVIYERALKALPGSY KLWHAYLRERLDLVRNLPVTHSHYDTLNNTFERALVTMHKMPRIWIMYLQTLTHQKWVTR TRRTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPSHIEDFIEFL LNSSLWQESAERLASVLNDDRFYSIKGKTKHRLWLELCDLLTRHANEVSGLNVDAIIRGG IRKFTDEVGRLWTSLAEYYIRRGLHEKARDVFEEGMSTVITVRDFSVIFDSYSQFEESML AYKMEEMGLSDEEDAEEGQENGVEEGDEEDIRFKGRALEEDFERKILHGFWLNDKNDIDL RLARFDYLMERRPELANSVLLRQNPHNVEQWHRRVKLFEGNATKQIMTYTEAVRTIDPMK AVGKPHTLWVAFAKLYEQHKDLANARVIFDKAVQVNYKTVDNLASVWCEWAEMELKHKNF KGALELMRRATAEPSVEVKRRVAADGNEPVQMRLHKSLRLWTFYVDLEESLGTLESTGAV YERILDLRIATPQIIINYAYFLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVK RYGKTKLERARELFENAVESAPADQVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNN EKLSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGEIDRAR GIYVFASQFADPRSDPEFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYL MQKDQTVNLDEAKDKLKEAGIPEDEMAALERQLAPAADNTVAKERKVGFVSAGVESRSDG GVITSANHEDIELPEESDSDDDDKVEIAQKDVPSAVFGGLIRKRDENETNGEVDATKDKD NENRLGALERIKRLKRN NT seq 2754 nt NT seq  +upstreamnt  +downstreamnt atgtcgatttcgcaggatttatacccttcggaagacgacctcatatacgaagaggagctt ctgcgaaaccccttcagcctgaagctatggtggcgctacctcgtcgcgcgttcggaggct ccgttcaagaagcgcttcgtcatttacgagcgcgccctcaaggcgctccccggaagctac aagctctggcacgcttacctccgcgagcgcctcgacctcgttcgcaacctccccgtcact cactctcactacgacactctcaacaacaccttcgagcgcgccctcgtcaccatgcacaag atgccccgcatttggatcatgtacctccaaaccctaacgcaccagaaatgggtcactcgc actcgcagaactttcgatagggccctctgcgccctccccgtcacccagcacgatcgcatt tgggagccatatcttgtctttgtcagtcagaagggtatccccattgagacttctcttcgc gtttatcgcaggtacttgaaatacgacccctctcacattgaggattttattgagtttttg cttaattccagtctctggcaagagtctgctgagaggcttgcttcggttctcaacgatgat cgcttttactcgattaagggtaaaaccaagcaccggctttggttggagttgtgtgatttg ctcactcgccatgccaatgaggtttctgggttgaatgtagatgctatcattaggggtgga attaggaagttcacggatgaggtgggtaggctttggacttcgttggctgagtattacatt aggaggggtttgcacgagaaggctagggatgtgtttgaggagggcatgtccactgttatt actgttagggattttagtgttatatttgattcttactcgcagttcgaagagagcatgctt gcttataagatggaggagatgggtttgagtgatgaggaggatgctgaggagggtcaagaa aacggtgttgaagaaggggacgaggaagatattcgtttcaagggaagggcgttggaggag gactttgagagaaagattttacatgggttttggttgaatgacaagaatgacatagacttg aggttggctcggtttgattaccttatggagaggaggccggaattggccaatagcgtgctt ttgcgtcagaatcctcacaatgtagaacagtggcaccggcgggtgaagctctttgaaggg aatgctactaagcagataatgacatacactgaagcagtgaggacgattgatcccatgaag gcagtgggaaagcctcatacgttgtgggttgcttttgccaaactgtatgagcagcacaaa gatcttgccaatgcccgggtcatatttgacaaggcagtgcaggtgaactacaaaactgtg gataatctggctagtgtctggtgtgagtgggcagaaatggagttaaagcataaaaatttc aaaggagcacttgagctgatgaggcgggctacagctgagccatcagttgaggtcaagcga agagtggctgctgatgggaatgaaccagtccagatgagactgcataaatctttgagattg tggaccttttatgttgatttggaggaaagcctgggtactttggagtctacaggggctgtt tatgagcggatattggatctacgaatagccacaccacaaataatcatcaattatgcatac ttcctggaggaacataaatactttgaagatgcttttaaagtttatgaaagaggtgtaaag atatttaagtaccctcatgttaaagacatatgggttacttatctctctaaatttgttaag agatatggaaagactaaattggagagagcaagagaactatttgaaaatgcagttgaatcg gccccagccgatcaagtaaaacctctttacctgcaatatgccaagctggaggaggactat gggcttgcgaagcgagctatgaaggtttatgatcaagcaactaaagctgttcctaacaat gagaagttaagcatgtatgaaatatatattgcccgtgctgctgagatatttggtgtaccc aaaacaagggagatctatgagcaggcaattgaatctggtcttcctgacaaggatgtcaaa actatgtgtttgaagtatgctgagctggaaaaaagcttgggagaaattgacagggcccgt ggaatatatgtatttgcctctcagtttgcagatccacgatctgatccagagttttggaat aaatggcatgaatttgaggttcagcatgggaacgaagacactttcagagaaatgcttcgt attaagaggagtgtctctgcaagctacagccagacacattttatactgcccgagtatctg atgcagaaggatcaaactgtgaatcttgatgaggccaaagacaaattgaaagaggctggg atccctgaggacgaaatggctgctttggaaagacaattagccccagcagctgacaataca gtggcaaaagagagaaaagttgggtttgtgagtgccggagtggaatctcgatctgacgga ggagtaataactagtgcaaatcatgaagatattgaattaccagaagaaagtgattcagac gatgatgataaggttgaaattgcacaaaaagatgttccttctgctgtgtttggtggtctg attagaaagagagacgagaatgaaacgaatggagaagtggatgctacaaaagacaaggat aatgaaaatcggcttggtgctcttgagagaataaagaggctaaaacgaaattaa

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