Cajanus cajan (pigeon pea): 109803665
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Entry
109803665 CDS
T04868
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109803665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109803665
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
109803665
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
109803665
NCBI-ProteinID:
XP_020220928
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Position
8:10386460..10391593
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AA seq
213 aa
AA seq
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MGEEVRVTASHNPNTVNDDEKLEFDIYPLNCYYFGSKDPIPFKDPTLSHRLLSYAARGMR
TCVQAVLLVELFKHPHLLLLQVRNSIYSLPGGRLRPGESDTDGLKRKLARKLSVEEDGDG
LEWEVGECLGMWWRPDFETLLYPFLPPNVKQPKECTKVFLVKLPASRKFIVPKNMRLLAV
PLCQVHENHKTYGQIISGVPQLLSKFSFNMIES
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaagaagttagggtcaccgcttcgcacaacccaaacaccgtaaacgacgatgag
aagctcgaattcgatatttaccctttgaattgttactattttggatccaaagatcctatt
cccttcaaagaccccaccctctctcatcgccttctcagctatgctgcccgaggaatgcgt
acttgtgtccaggctgttttgctggttgaattgttcaaacatccgcatttgttgttgttg
caagtaagaaattccatctatagtctccccggtggccgattaaggccaggtgaatcagat
actgatgggttgaagcgtaagctggcaaggaagctttctgttgaggaagatggggatggg
ttagaatgggaggtgggtgaatgccttggaatgtggtggaggcctgattttgaaacgtta
ctgtatcctttcttgccacctaatgtaaaacagcccaaggagtgtacgaaagtcttcctt
gtgaagctgccagccagtcgaaagttcattgtgccgaagaacatgaggttgcttgcagtc
ccattgtgccaagttcatgaaaatcacaagacatatgggcaaattatatcaggggtacca
cagcttctgtcaaaattctctttcaacatgattgaatcttga
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