Cajanus cajan (pigeon pea): 109804186
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Entry
109804186 CDS
T04868
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109804186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109804186
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109804186
mRNA degradation factors
5'-3' decay
Decapping complex
109804186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_EML_2
GerPC
Motif
Other DBs
NCBI-GeneID:
109804186
NCBI-ProteinID:
XP_020221566
LinkDB
All DBs
Position
8:complement(16288056..16299375)
Genome browser
AA seq
1395 aa
AA seq
DB search
MASSGNPNQQPQPQQQQQNHFDFNKLFKAPTTSPSASSPSPSIPNSSNLNTSPSFPAPSP
STPPPSSYPTPSSSYPPPTGTYPYHHPHFLPYPQLHHHQQQHQEHPLILHHLPQMHAPQR
PPIFQPPSPSSPHPLMALLGTQNPPSNQEPPVVYTSPSTSSPSPSPSHVASDFPNPAGLP
STQPSGSPVTLASAQSTPARMLSTKLPKGRHLIGEHVVYDIDVRMPGEVQPQLEVTPITK
YASDPGLVLGRQIAVNKSYICYGLKLGAIRVLNINTALRYLLRGHTQRVTDMAFFAEDLH
LLASASTDGRIFIWKINEGPDEDDKPQITGKVILAIQILGESESVHPRVCWHPHKQEILM
VAIGNRILKIDSMKAGKGETFSAEEPLKCSIDKLIDGVHLVGKHDGNVTELSMCQWMKSR
LASASADGTVKIWEERKAAPLAVIRPHDGKPVNSATFLTAPHRPEHIVLITAGPLNQEVK
IWVSDNEEGWLLPSDSESWNCIQTLDIRSSSEANPEDAFFNQVVALPRAGLFLLANAKKN
TIYAVHLEYGSNPTATRMDYISEFTVTMPILSLTGTSDSLPDGEHIVQIYCVQTQAIQQY
GLNLSQCLPPPLDNVELEKTESNLSRAFDALDGSTNLETGNMPQVHSSSSESAPVVSLTV
SSAISGLPEASISDTETKSNDLPSHNGFEHTPTAPPPLPQSPRLSQKLSGFKNSSNNLET
SSTSADHNSEQTNLNSSAERRMESEKDMADVSASGDNLRKDDKVVQNDVSVVSNAPPTYK
HPTHLVTPSEIFSKTSLSSDNSHISQGMNSQDVASHSNVENFEVEVKVVGETGSNQENSE
YERDRDSHTNVAEKKEKLFYSQASDLGIQMARETYNIEGARQADTIKTTDAPDQSCNSVE
EEVQDTSKDVPANISESETVAAAVQSPAPSGKGKRQKGKNSHVSGASSPSPSPFNSTDSS
NDQGVNSGGSSMEAALPQLSAMQEMMGQMLSMHKEMQKQMNAMVSVPVTKEGKRLEGSLG
RNMEKVVKAHTDALWARLQEENAKQEKLERDRTQQITNLISNYVNKDLVSILEKIIKKEI
SSIGTTITRSISQVIEKTISSAITESFQKGVGDKALNQLEKSVSTKLEATVARQIQAQFQ
TSGKQALQEALKTSLEASVIPAFEMSSKAMFEQIDVAFQNGLLKHTTAIQQQFDSTHSPL
AMTLRDTINSASSITQTLSGQLADGQRKLLEIAANSKVAADPFVSQINNGLHEMTEDPTK
ELSRLISEGKFEEAFTGALHRSDVTIVSWLCSQVDLAGILAMVPLPLSQGVLLSLLQQLS
CDISSETPRKLAWMTDVAAAINPADPRIAAHVRRILDQVYRTLGHQRTLPTTSPSEASTI
RLLMHVINSVLLSCK
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggcttcatctgggaatccaaatcagcagccacaaccacaacaacaacaacaaaaccat
tttgatttcaataagcttttcaaggcaccaacaacatcaccttcagcatcatcaccctca
ccctctatccctaattcttcaaatttgaacacttccccatcattccctgctccttctcct
tccacaccccctccttcttcctaccccaccccctcttcctcataccctccaccaactggc
acatacccttatcaccaccctcactttctcccctatccacagcttcaccaccatcaacaa
caacaccaagaacaccctcttatcctccaccaccttccccaaatgcatgcccctcaaaga
ccccctattttccaacccccttctccatcctcaccacaccccctcatggccttgttgggc
acccaaaaccctccctccaatcaggagccaccagttgtgtacacatctccctccacctca
tcaccatcaccatctccatcacatgtggcttctgattttccaaaccctgcagggttgccc
tccacacagccctcagggtctcctgtgactctggctagtgctcagtccacaccagccagg
atgctcagcaccaagcttcctaaggggaggcacttgattggagagcatgttgtgtatgac
attgatgttaggatgcctggagaggtgcagcctcagcttgaggtcactccaatcaccaag
tatgcctctgatcctggcctcgtgctcggccgccaaatcgcagtgaataagtcttacatt
tgctatggactcaaacttggggccatccgggtccttaatatcaacactgcattgagatac
ttgcttcgtggtcacactcagagagtaacagacatggctttcttcgctgaggatcttcac
ctgttggccagtgcaagcactgatgggagaatatttatatggaaaatcaatgagggccct
gatgaggatgacaagcctcaaattactggaaaagttatcctagcaattcaaatattagga
gagagtgagtcagttcatccaagagtatgctggcacccacacaaacaagagattttaatg
gttgctattggaaaccgtatcctcaaaattgacagcatgaaagccggaaaaggtgaaact
ttttctgcagaggagcctctcaaatgttccattgataagttgattgatggggtgcatctt
gttggtaagcacgatggcaatgtcactgagttgtcaatgtgccaatggatgaagagtcga
ttagcttctgcatcagctgatggcacggtgaagatatgggaagaacgtaaggctgcacca
cttgctgttataagaccacatgatggtaaacctgtcaattctgcgacgttcttgactgct
cctcaccgccctgagcacattgttcttatcacagcgggaccactaaatcaggaagtgaag
atatgggtctctgataatgaagaaggctggctattgcctagtgattctgagtcatggaat
tgtattcagactttagatataagaagttcgtctgaagccaaccctgaggatgcattcttt
aatcaagttgtagcattgccccgtgctggtttgtttctgcttgcaaatgccaagaaaaat
acaatatatgctgtgcacttagagtatggatccaatccaactgcaactcgcatggattac
atttctgagttcacagtcacaatgcctatattaagtcttactggaactagtgatagttta
ccagatggagagcatattgtacaaatatattgtgtccaaacacaagctattcaacagtac
ggactcaatttgtcacaatgtttgcctccacccctggacaatgttgaacttgagaaaaca
gaatccaatctatctcgtgcctttgatgctttggatggatctacgaatctggaaactgga
aatatgccacaagttcattctagcagttctgaaagtgctcctgttgtgagccttactgtt
tcatcagctatttctggtctacctgaagcttctatatcagatacagagaccaagtcaaat
gatttaccttctcataatggttttgaacatacccctactgctccacctccacttccccag
agtccaagattgtcccagaagttatctggtttcaaaaattcatcaaataatttagagact
agttcaaccagtgctgatcacaacagtgagcagacaaaccttaattcttcggctgaacga
agaatggaatctgaaaaagatatggcagatgtgtctgcatcaggtgacaatttgcggaag
gatgataaagttgttcaaaatgatgtttctgttgtttctaatgcccctccaacatataaa
cacccaacccatttggtaactccatctgagatcttctcgaaaacttctttatcttctgat
aattcccatatttctcaaggtatgaactctcaagatgtggcttcccatagcaatgtagaa
aactttgaagttgaggttaaagttgtaggtgagacaggttctaatcaagaaaatagcgag
tatgaaagagacagagactcgcacaccaatgttgctgagaagaaggagaagctattctat
tctcaggcctctgatctaggcattcagatggctagagagacttataacattgagggagct
cgtcaagctgatactattaagaccactgatgcacctgatcaaagttgtaactctgttgag
gaagaagttcaagacacgagtaaggatgtacctgcaaacatcagtgaatcagaaactgtg
gcggctgctgtgcaatctcctgcaccttctgggaaaggaaaaagacaaaaagggaaaaat
tctcatgtgtctggtgcatcttccccttctcccagtccttttaactcgacagattcatca
aatgatcaaggtgtcaattcaggagggtcatccatggaggctgctttaccacagttatct
gctatgcaggagatgatgggccagatgttaagcatgcataaagaaatgcaaaagcagatg
aatgcgatggtgtctgtcccagttactaaggaaggcaaaagattagaaggatccttgggt
cgaaacatggagaaagttgtcaaggctcatactgatgctttgtgggctcgattgcaagaa
gaaaatgcaaagcaagagaagttagagcgagaccgtacacaacaaataacgaacttgatc
tccaattatgtaaacaaggacttggtatctatattggagaaaatcattaagaaggaaata
tcttcaattggaacaaccattacccgttcaattagtcaagttatagagaaaaccatatca
tcagctattacagaatcgttccagaagggagtgggagacaaggcattgaatcaactagaa
aaatcagttagtacaaaacttgaagctactgtggctaggcagatacaggcacaatttcaa
acctctggcaagcaagctcttcaggaagcacttaagactagtttggaagcttcagtcatt
cctgcttttgagatgtctagcaaggctatgtttgagcaaattgatgtcgcatttcaaaat
ggacttctgaagcacacaactgctattcaacagcagtttgattctactcattcgccacta
gccatgactttgagggatacaattaattcagcatcatcaatcactcaaactttgagtgga
caattggctgatggccaacgtaaactgttagaaattgcagctaactccaaagtagctgca
gatccctttgtatcacaaatcaacaatggcttgcatgagatgactgaggatcctaccaaa
gaactatcaaggttgataagtgagggaaaatttgaggaagcatttactggagcccttcat
agaagtgatgttacgatagtttcttggttatgttctcaggttgatttagctggtattttg
gcaatggtgccactgccattaagccaaggagtacttctgtctcttctacagcagttgtcc
tgtgacatcagttcagagacacccagaaaattggcatggatgacagatgttgctgctgct
ataaacccagcagatccaaggattgccgcacatgtgcgacgaatattggatcaagtgtac
cgaacactgggccatcaacggactttaccaactacctccccttcggaagcgagcactatt
cggcttctcatgcatgtcataaactcggtgttgttgagctgtaaatga
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integrated database retrieval system
