Cajanus cajan (pigeon pea): 109805015
Help
Entry
109805015 CDS
T04868
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03022
Basal transcription factors
ccaj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109805015
09124 Replication and repair
03420 Nucleotide excision repair
109805015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaj03021
]
109805015
03400 DNA repair and recombination proteins [BR:
ccaj03400
]
109805015
Transcription machinery [BR:
ccaj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109805015
DNA repair and recombination proteins [BR:
ccaj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109805015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
SHOCT
Plant_vir_prot
Motif
Other DBs
NCBI-GeneID:
109805015
NCBI-ProteinID:
XP_020222531
LinkDB
All DBs
Position
9:4003991..4015409
Genome browser
AA seq
584 aa
AA seq
DB search
MSSAQVVKRAKYKTTVKDPGTPGVLKLTRDKFVFKPNDPTSTNKLDVEFRFIKSHKHTKE
GSNKPPWLNLTHGQGSYIFELESFSDLHVCRELVGIALSKHGEATKVISEEQLSAAEMTL
RIKLLQENSKLQRLHKELVASGKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIFDTK
PMSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMNEVDFWNKYFKAEYIHSTK
NAVAAAAEAAEDEDLAVFLKDDEILEIEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFR
DGSKDISEVQNSLYKRTLLQDLNRQGAVVLEGKTLDMEMENPRTVAEILARRKQETGGVV
DEERRNRISMTPIEDLQEHDNHPYAPLCIKDPRDYFDSQQANAVKTLDDSQAGMEQMICS
LGPEEAYGSLRASISKIKATGLRDSLFSPEVALKVLSGLTKNISSTKYHLGKSSQESVLD
ILPNTTKEKLLDHWVCSQELLRHFWSSYPITTQNLNNKTKRLKDSISQIYSKLEEIKVSA
KSDLRHQVSLVVHPMQQALDAALLHYDADIRKRNARGAKPNGYV
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccgcgcaagtggttaagcgcgccaaatacaaaaccaccgtcaaggaccctggc
actcccggcgtcctcaaactgactcgtgataagttcgttttcaagcctaatgatcctacc
tccaccaacaagctcgacgtcgagttcagatttatcaagagtcataaacacactaaagag
gggtcaaacaaaccaccgtggcttaaccttacccatggacagggaagttacattttcgag
ttggaaagtttttcagatcttcatgtttgccgggaattggtgggtattgcccttagcaag
cacggagaagctacaaaagttatttctgaggaacagctgagcgctgctgaaatgacactc
aggataaagctattgcaggaaaatagcaagttgcagaggcttcataaggaacttgtggct
agtggtaagcttacagaatcagaattttgggctacaaagaagaaattactggatcaagat
gaaagcagaaagttaaaacagcggattggttttaaaaattctttaatcttcgacacaaag
cctatgagtgatggacggataaaccaggttaaatttcaattgaccccagagataaaatat
cagatttttgccctcaaacctgccgtccatcaggcattcctcaattttgtacctagtaaa
atgaatgaggtagatttctggaataagtacttcaaagctgagtatattcatagtaccaaa
aatgctgttgcagcagctgctgaggctgctgaagatgaggatctcgctgtttttttgaaa
gatgatgagatattagaaattgaagctcgaaagaaggtgcgacgggttgatccaacttta
gacatggaagcagaccaaggagatgattacacacatcttcctgatcatgggatcttccgc
gacggtagcaaggatatatctgaagtccaaaattctctgtacaagagaacattgttgcag
gatcttaatagacaaggtgctgttgttcttgaaggaaaaactttagatatggagatggaa
aatccaagaacggtagcagaaattcttgctcggagaaaacaggaaactggtggggttgta
gacgaggagagacgaaacagaatttcgatgacaccaatcgaggatcttcaagaacatgat
aatcatccttatgcaccactctgtatcaaggatccccgtgactattttgattcccaacaa
gctaatgcagtaaaaactttggatgattcccaagcaggaatggagcaaatgatatgcagt
ttaggtcccgaggaagcctatggctctttgagggcatcaatatctaaaatcaaagctaca
ggattaagggattctctctttagtcctgaggttgctcttaaggtcctcagtggattgact
aaaaatatctcaagcaccaaatatcatcttgggaaaagttctcaagagagtgtccttgat
atattgcccaatacgacaaaggagaaactactagatcattgggtgtgcagtcaagaattg
ctgaggcacttttggtcttcatatccaattacaacacaaaaccttaataataagacaaaa
agactgaaagattccatatcacaaatttattctaaacttgaggaaataaaggtatccgca
aagtcagacctgcggcaccaggtttcccttgttgtccatcctatgcagcaggctctggat
gccgccttgttacattatgacgctgacattaggaaaagaaatgcaagaggagcgaagcct
aacggttatgtttag
DBGET
integrated database retrieval system
