Cajanus cajan (pigeon pea): 109805368
Help
Entry
109805368 CDS
T04868
Name
(RefSeq) sister chromatid cohesion protein SCC2
KO
K06672
cohesin loading factor subunit SCC2
Organism
ccaj
Cajanus cajan (pigeon pea)
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccaj03036
]
109805368
Chromosome and associated proteins [BR:
ccaj03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
109805368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
PHD_2
LETM1_C
VPS18_RING_C
Motif
Other DBs
NCBI-GeneID:
109805368
NCBI-ProteinID:
XP_020223012
LinkDB
All DBs
Position
9:complement(324158..342541)
Genome browser
AA seq
1808 aa
AA seq
DB search
MSFPFPPGVVAASGHRGIGLSNTIHSEVASYLPLPLLPVWCGATVQDPPLVESPERLNHV
DVLSQSGKIAELLRRADMSYLKLTDDAKVVPNKDDDEPPLELHDEVLRCYPEAFDYDYSA
AGPVKEQISGSALPEKRQSESSLPIQSQIPKDYNPTHTHQLDNVSTNDISTLSSKKSKVK
KKSGDGISIAPDSAELQGAHIERFYEFLEDLCNKSEFHGDDRDEAEWLPLPLSDLRLLVN
EITSICEKKLLHLVPVEVLVRLLTVLDHQIHRAEGLSIEECDNSDSELVSSVLIALESIH
AALAVMAHTDMPKQLYKEEIIERILEFSRHQIMDVMCACDPSYRALHRPSENTAFEVDDY
EENDAEFGSASKKRRTSKASKSKKSASSRLSTAVNTILQKLCTVLGLLKDLLLIERLSDS
CILQLVKTSITTFLVDNIQLLQLKAISLLSAIFYLYTQHRTYVIDEVVQLLWKLPFSKRA
LRSYHIREEEQRQIQMVTALLIQLIHCSANLPDALRKASNGNAVLEASVDASYPTKCHEA
TTEACCLFWSRVLQRFASVKTQDASELKTIIENLVTDLLTTLNLPEYPASAPILEVLCVL
LLQNAGPKSKDVSVRSMAIDILGTIAARLKRDALVCSQEKFWILQDLPSQDAATQHLPND
ACCVCLGGRVENLFICHDCQRLFHADCLGIKEHEVSSRNWSCQTCICHKQLLVLQSCCNS
QSKNDVKKNRNVSKKTEIPKHEIVQQFLLNFLQDATSADDLHLFICWFYLCLWYKDDSNC
QQKSIYYITRMKSKIIVRDSGTVSSMLTRDSIKKITLALGQNSSFCRGFDKIIHTLLTSM
RENSPVIRAKALKAISIIVEADPEVLGDKRIQSAVEGRFCDSAISVREAALELVGRHIAS
HPDVGFKYFEKIAERIKDTGLSVRKRAIKIIRDMCTSNANFSGFTRACIEIISRVSDDEA
SIQDLVCKTFNEFWFEEPPALQTQVFGDGSTVPLEIVKKTEQIVEMLREMRNNQPVIPIN
QLLVTVIKRNLSLDFLPQSAKAIGVNPGSLATVRKRCEMMCKCLLEKILQVDEMNSDEVE
VRALPYVLVLHAFCLVDPTLCAPASNPSQFVVTLQPYLKTQVDNRMVAQLLESILFIIDA
VLPLLGKLPPSIVGELEQDLKLMIVRHSFLTVVHACIKCLCSVSKMAGKGAAVVEQLIQY
FFKCLDTQAVDNKQKVGRSLFCLGLLFRYGNQLLASTSNKLIDVGSSLRLFLKYLSMEDF
VIKVRSLQALGFVLIARPEYMLENDVGKIMEETLSSAADTRLKIQGLQNMFEYLLDAESQ
IGTDKEDGNVANYSVGAGQIVPVAAGAGDTNICGGIIQLYWDNILGRCLDFCEQVRQSAL
KIVEVVLRQGLVHPITCVPYLIALETDPLESNSKLAHHLLMNMNEKYPAFFESRLGDGLQ
MSFMFMQSICGSSENFDHRIQSKIPISGKGKPDAGLLAQAKLGVSRIYKLIRGNRVSRNK
FLSSIVRKFDNPRWNKLVIAFLTYCTEVLALLPFISPDEPLYLIYAINRIVQVREGPLEA
NFKAWCSSILRYSTPYGNGMCQQGPEEPTVNTQVMSVDLNGTFQQNVDAQPNSNDMRSLD
LNGSNHQLPEANLHAVGFTDSVSFSKDDLEKVQADCLSAIALQLLLKLKRHLKIMYSLDD
ARCQAYSPNEQPKPGEVISRQNIALNIDESQFSLPTNPQELVQRYQEFKHALREDTMDYR
LYTANIKRKRPTTTPRKVQVRKSAHVAGARVAGGYDEDEDDDDWTGGSATRNINFSGRRS
SLRSSRQY
NT seq
5427 nt
NT seq
+upstream
nt +downstream
nt
atgagttttccctttcctcccggcgtcgttgcggcctccggccaccgtggcatcggcctc
tccaacaccatccactccgaggtcgcctcctaccttccgctgccgctgctcccggtttgg
tgcggcgccaccgtccaggaccctccccttgtcgagtcgcccgagcgcctcaaccatgtc
gacgtgctctcgcagtccggcaagatcgccgagctgctccgccgcgctgatatgtcctac
ttgaaattaacagatgacgccaaagttgttccgaacaaggatgatgatgagcctccttta
gaacttcacgatgaagttctgaggtgttatcctgaagcatttgattacgattacagtgct
gcaggtcctgtcaaggagcagatctctggtagtgcattacctgaaaagaggcagtctgaa
tcaagtcttcctatccaaagtcagattccaaaagactacaatccaacacatacacaccag
cttgataatgtttccacaaatgatatttctacattatcttctaaaaaatcaaaagtcaaa
aagaaaagtggcgatggaatatctatagcacctgattctgctgagcttcaaggtgcccac
attgaaaggttttatgagtttttggaggacttgtgcaacaaatctgaatttcatggtgat
gatcgagatgaagcagaatggttgccattgcctctttcagatcttagattacttgtcaat
gaaataacatctatatgtgaaaagaaacttctgcatttggttcctgtagaagttcttgtt
agattattaacagttctagatcatcagatacatagagcagaaggcctgtcaattgaggaa
tgtgataattcggattcggagttagtttcttctgttttaattgcgttagagtccattcat
gctgcactagcagtgatggctcatacggatatgccaaagcaactttataaagaagagatc
attgagagaattctggagttttccaggcatcagataatggatgttatgtgtgcatgtgat
ccatcataccgtgcgttacatagacctagtgaaaacactgcatttgaagttgatgattat
gaagaaaatgatgctgaatttggttcagctagcaagaaacggcgaactagtaaggcttca
aagtcgaagaaatcagcatcgagcaggctctctactgctgtgaatactattcttcagaag
ttgtgcactgttcttggactactgaaggatttgttgttaatagagaggttatcagatagt
tgcatactacaacttgtaaaaacaagcattacaacatttttggttgataatatccagctt
ttgcaattgaaggcaatcagtttactcagtgcgatattctatttgtacacacaacatcgc
acttatgtgatagatgaagtggttcagcttttatggaagttaccgttttcaaaacgagct
ttaagatcttatcacattcgtgaagaagagcaaaggcagatccaaatggttactgctttg
cttattcagttgattcattgcagtgctaaccttcctgatgccttaagaaaagcatcaaat
ggtaatgctgtattagaagcctcggttgatgctagttatccaactaaatgccatgaggca
acgacagaagcctgctgtctattttggagccgtgtacttcagcgttttgcaagtgtgaag
actcaggatgcttcggagctgaaaaccataatagagaatcttgttacggatttactgacc
actctaaatttacctgaatatcctgcttcagctcctattctagaggttctctgtgttcta
ctacttcagaatgctgggccgaaatctaaggacgtctctgttcgttccatggcgattgat
attcttggtacaattgctgcaaggttgaagcgtgatgctttggtttgtagccaggaaaag
ttctggattcttcaggatttacctagtcaggatgctgctacccagcatcttccaaacgat
gcctgttgtgtctgtttggggggaagggtagaaaatttgttcatatgtcatgattgccag
aggctttttcatgctgattgcctgggaattaaagaacatgaagtttccagtcgaaactgg
tcctgccagacatgcatctgtcataagcaactacttgtattacaatcatgttgcaattct
cagagcaagaatgatgttaaaaaaaatcgcaatgtgtcaaaaaaaactgaaattcctaag
catgagattgttcaacagtttcttttgaatttccttcaagatgccacctctgctgatgat
ctgcatcttttcatttgctggttttatctgtgcttgtggtacaaagatgattcaaattgt
cagcaaaagtccatttactacattaccagaatgaaatcaaaaatcatagtacgggattct
ggtactgtgtcttcaatgttgacacgggattcaatcaagaagattactttagctttgggc
caaaacagttcattttgccgaggatttgataagattattcacacgcttctgacaagcatg
agggagaactctccagttattagggctaaggctttaaaagcaattagtatcattgtagag
gctgatccagaggtattgggtgataagcgaatacaatcagctgttgaaggaaggttttgt
gattctgctatatctgttagagaagcagcattggaacttgttggtaggcatattgcttca
catccagatgtgggttttaagtatttcgagaagattgctgagagaatcaaagatactgga
ctaagtgttcgaaaacgagctataaaaatcattcgagatatgtgcacttcaaatgccaac
ttctctggctttacaagagcatgcatagagatcatttcacgtgtcagtgatgatgaagca
agcatccaggaccttgtttgcaaaacatttaatgagttctggtttgaggagcctcctgcg
ttgcaaactcaggtctttggggatggcagtactgttccacttgagatagttaagaaaaca
gagcaaattgttgaaatgttgagagaaatgcgcaataatcaacctgttatacccattaat
cagcttcttgtaactgtaataaagcgcaatttgtcacttgattttttgccacaatctgca
aaagccattggggtcaacccagggtcccttgcaacagtgcggaagcgttgtgagatgatg
tgcaaatgcttgctggagaagatattgcaggttgatgaaatgaacagtgatgaagttgaa
gtgcgtgcacttccgtatgtgttagtcttgcatgcattttgtcttgtggacccaactctc
tgtgcaccagcttcaaacccatctcaatttgttgttactttgcagccatatttgaagact
caggttgacaatcgcatggttgcgcagctacttgagagtatactattcataattgatgct
gtgctgcccctgcttgggaagttacctccaagtattgttggggaacttgagcaagacttg
aaactgatgattgtccggcattctttcttgacagttgtccatgcctgtatcaagtgcctc
tgttctgtgagtaagatggctggaaaaggggctgctgtagttgaacaacttattcaatac
ttcttcaaatgtttggatactcaagcagttgataacaagcagaaagttggacgatctctc
ttctgtcttgggttgcttttccgttatggaaatcaattgttagcaagtaccagtaataaa
cttattgatgttggaagcagtttaagattgtttttgaagtatctctctatggaggatttt
gtcatcaaggttagatcattgcaggcactagggtttgttctcattgccaggcctgaatat
atgttggaaaatgatgttggaaaaataatggaggaaacattatcctctgctgctgatact
cgacttaagattcaaggattgcaaaatatgtttgagtatcttctagatgctgaaagccaa
ataggaacagataaagaggatggaaatgttgccaattactctgtaggagctgggcagatt
gtacctgttgctgctggtgccggggatacaaacatatgtgggggtataattcagttgtat
tgggataatattttgggcaggtgtttggatttctgtgaacaagttcgtcaatcagccctg
aagatagttgaagttgtgctgcgccaaggtcttgttcatccaatcacctgtgttccatac
cttatagcacttgaaacagatcctctggagtcaaattcaaagttggctcatcatcttctg
atgaatatgaatgaaaagtaccctgcattttttgaaagccgcttgggtgatggacttcaa
atgtcatttatgtttatgcaatctatttgtggcagttctgaaaattttgatcataggatc
caatctaaaatccctatttctggaaaagggaagcctgatgctgggttacttgcacaagct
aaacttggggtttctcgaatatacaagctcattcgagggaaccgggtatcaaggaacaaa
tttttgtcctcgattgtgcgaaagtttgataatccaagatggaataaattagtaatagct
tttttaacatactgtactgaagtcctagcattgctgccattcatttcgcctgatgagcct
ctttatttaatctatgctatcaatcgaatagttcaagtaagggaagggccactagaagcg
aactttaaagcctggtgttcaagcattttacgttatagcacaccttatgggaatggaatg
tgtcaacaggggccagaggagcctactgttaacacccaagtaatgtcagtggatttgaat
ggaacatttcagcaaaatgtagatgctcagcccaattccaatgatatgagatcactagat
ttaaatggatcaaatcatcaactgcctgaagcaaatttacatgctgtgggtttcacagat
tctgtttccttctcgaaagatgatctggagaaagttcaggccgattgtttatcagcaatt
gcattgcagcttcttttgaagcttaaaagacacctgaaaatcatgtacagtcttgacgat
gcccgttgtcaggcttattctcctaatgaacaaccaaaacctggagaagttatctccagg
cagaatattgctttaaatattgatgaatctcagttcagtttgcctacgaatccgcaagaa
ttggttcaaagatatcaggaatttaaacatgctttgagggaagacactatggattatagg
ctttacactgcaaatataaaacgaaagcgacctacaactacaccaagaaaagttcaagtt
cggaaatctgcacacgtggcaggtgcacgtgtggcaggtgggtacgacgaggatgaggat
gatgatgattggactggtggaagtgcgacacgcaatataaattttagtggccgcaggagt
agccttagaagctctaggcaatattga
DBGET
integrated database retrieval system
