Cajanus cajan (pigeon pea): 109806931
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Entry
109806931 CDS
T04868
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109806931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109806931
03012 Translation factors [BR:
ccaj03012
]
109806931
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109806931
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109806931
Translation factors [BR:
ccaj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109806931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RVT_3
DEAD
HA2_C
OB_NTP_bind
HA2_N
Ank_2
Ank_5
AAA_22
AAA_19
nSTAND3
R3H
Helicase_C
ATPase
AAA_7
ABC_tran
PhoH
AAA_25
RsgA_GTPase
Rad17
AAA_23
Motif
Other DBs
NCBI-GeneID:
109806931
NCBI-ProteinID:
XP_029128924
LinkDB
All DBs
Position
11:complement(9318437..9337301)
Genome browser
AA seq
1396 aa
AA seq
DB search
MANTEEPSQQLLDANSEALLEKHSKTLNNFTASNDRVFMYLSNLSDEERGIVDRLCLLKG
LGVSFCREQRLCVYKMNTEFSKQYQPLLSRKRKNREEPESCGEEKEINDELIKIWISQTL
QNFLASDDEVYDFEANLSPEECVAVQQLSQKMGFRVENSGSGTKLQVSVHKIKNKINTTT
ILENLHRFSFSEESKRVLGGLLMRYPPGDEEIWGDMIGAYSDTTNRMEQKDDDFFSQPCM
SKVEITKKLEDLSARMKNSSALKLIAKKRSKLPITSLKDVIPSTVESNQVVIICGETGCG
KSTQVPQYILDHMWHKGEVCKIVCTQPQCISAASVSERISSERGETVGNTVGYKLWFEKR
GGRQSSIVLCTTGVLLKVLVSTGSHFLKTQSVKDDISSISHIIMDEINERDRYSDLMLAI
LRELLPSNPHLHLILMSASVDAARFSQYFGACPIIHVPGLTYPVKTHYLEDVLSIVKSRA
YSYHDKYQELNQAEKMSLDEAIDFAWSNDEWSSLLKLLYIKATPKVFDYQHSLTGLNPLM
VFAGKGKVDDMCMLLYLGANCHLRAKDGTTALEIAEKENQQVAVELLKKHMDNDFSNKEG
KNFIDKYLAIADPKVVNVVLIEQLIKIICVDSKDGDIIVYLPGLDEIIKTRERLLSSRFF
NRRSRFCVISLHSKVLDTDLKSFYMPLPHGCRKIVLSTNIAESAVTLDDIQVKLLDPSCK
IEGFLNRTLDPPGFKSIQNGVRVLKEIGALSVDEQITKLGEKLGSLPVHPSTSKMILFAI
LMNCLDPALTLACASECTDLFFHPILPDEKKRAAAARSELASLYGGCGDQLAIIAAFDCW
HVAKKMGLESRFCSQYFVSYKSLKRLATMRDKLIEELYRHGLIHGLVSSYRSNAHDLGIL
QAVLVAGMYPMVGKLFSPHRSGNKFFVQTKSGDTASLNSHSVNSLLSCQKIFDCSLVAYD
EITSSDRGMCISNCTVVGLLPLFLLSKDIAVAPAKDCTEGDEFMSSPDNIVRVTIDGWLN
FESTAIDTSLMIYLREQLSAAISYKVTHSTDDVLPPVLRTAVDALACILSCHGLSGIPQT
SDFVNTLTTTTNATNPSNQTNQNAPMGLACSTPTKQTDKTPEGFCTALKNLNDVPSSGSS
LSTSYGAKNPSDPTCQNTATSAACSVQSADEKDDVTMTDSSPSKDPNPEMRGDASKGASY
QKINIAVGWTFPEEGWIKANVDGSYRLKQRHSSCAGAFRDSTGSWCFGFALNLGPLFCRG
KDSERFSIQFIIFSELWGIFTALKLAKDKGISKLVIESDCHSAVDAIFDEKAKGGYFSPL
IESIIELMDGNWMVRISKCYREGNVVADWLTHYAYSLDIGLHVLDVPPSGCDKLVAADSA
GVYQLRSVRATPNVKA
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacacggaggagccttctcagcagcttctcgatgccaactcagaggctttgttg
gaaaagcattccaagacactcaacaactttacggcttccaacgatcgagtgttcatgtat
ctcagtaatttgtctgatgaagagcgtggcattgtggaccggttatgcctccttaagggg
ttaggtgtaagtttctgcagggagcagagactatgtgtttacaaaatgaacaccgaattc
tcaaaacagtatcaacctctcttgtcaaggaaaaggaagaacagagaggagccagagtcg
tgcggggaggaaaaagaaattaatgatgaattgattaaaatctggatttcccaaacatta
caaaattttttggcttcagatgacgaagtgtacgattttgaagctaacttgtctcctgaa
gaatgtgttgcagtgcaacaattatctcagaaaatggggtttagagttgaaaattcaggg
agtgggaccaaactgcaagtatctgtgcacaaaatcaaaaataagattaacaccactacc
atattagaaaaccttcatcgtttctcattttctgaagagtccaagcgggtattaggaggt
ttattaatgcgttatccacccggtgatgaagaaatttggggagatatgattggagcttat
agtgacactactaacagaatggaacaaaaggatgatgattttttcagtcagccttgtatg
agcaaagttgaaattactaagaaattggaggacctttctgccagaatgaagaattcctct
gccttgaaactgatcgctaagaagagatctaagcttccaattacatccttgaaggatgtt
attccatcaactgttgaatctaaccaggtagttatcatatgtggtgagactggttgtgga
aagagcactcaggtcccacaatatattttggatcacatgtggcacaagggtgaggtctgc
aaaatagtttgcacccagcctcaatgtatctctgcagcttcagtttctgaaagaatctcc
agtgagagaggagagacagttggaaacactgttggatacaagttatggtttgaaaagaga
ggaggaaggcaatcatcaattgttctgtgtactactggagttctattgaaggtgttggtt
tctacaggttcccattttctgaagacccagtctgtgaaggatgacatttctagcattagt
cacataattatggatgaaattaatgaaagggacagatactcagacctcatgttggcaatc
ctcagagagttgctcccttcaaatccccacctacatctgatactaatgagtgctagtgtt
gatgctgcaagattttctcaatattttggtgcctgcccaattatccatgttccaggactc
acatatccggtcaaaactcactacttggaggatgtcctttctattgtaaaatctagagca
tattcttatcatgataaataccaagaacttaatcaggcagagaagatgtctctagatgaa
gcaattgattttgcttggtctaatgatgaatggagttcattgttaaagcttctttatatt
aaagctaccccaaaggtctttgattatcagcattcattaactggcctaaatccattaatg
gtgtttgctggaaaaggtaaagtggatgatatgtgcatgctcttatatttaggggcaaac
tgtcatttaagggcaaaagatggaacaactgcactcgagattgctgagaaggaaaaccag
caagtagctgttgaattgctgaagaagcacatggacaatgatttttccaacaaagaaggg
aaaaatttcatagataaatatcttgcaatagccgaccctaaagttgtcaatgttgttctg
atagagcaactgataaaaataatatgtgttgattcaaaagatggagacatcattgtttac
cttccaggtttggatgagataattaaaacacgtgaaagattgctttcatcccgttttttc
aatagaagatcaaggttttgtgtcatatctctgcattcaaaggttctagacactgatcta
aagagtttttatatgcccctaccccatggatgccgcaaaattgttctctctaccaatatt
gctgaaagtgctgtcacccttgatgatatacaggtgaagttgcttgatccaagctgcaaa
atagaagggtttctgaaccggacattagatcctccaggatttaagtctatacaaaatggt
gttagagttcttaaagagattggggccttgtcagttgatgaacagatcaccaagctaggg
gagaagcttggctctcttcctgttcatccatcaacaagcaagatgattctttttgccata
ttgatgaattgccttgatccagctttaactcttgcttgtgcatctgagtgtacagatcta
ttttttcatccgattttacctgatgaaaagaagagagctgcagctgccagatctgagctt
gcttctttgtatgggggatgtggtgaccagttggctataatagcagcatttgattgctgg
catgttgcaaagaaaatgggtctagaatcacggttttgttctcagtattttgtttcttat
aagagtttgaaaaggttagcgacgatgcgtgataaattaatagaagaactatatcggcat
gggcttattcatgggcttgtttcaagttaccgctcaaatgcccatgatctgggtatactt
caagctgttttggtagcagggatgtatccaatggttgggaaattattttctcctcacaga
agtggaaataaattttttgttcaaactaaaagtggtgatactgctagcctgaatagtcat
tccgttaattcattgttgtcatgtcagaaaatttttgattgctcattagttgcatatgat
gagattactagcagcgacaggggcatgtgcataagcaactgtactgttgttggactactt
ccattatttctgctttccaaagacattgcagttgctccagcaaaggattgtacagaggga
gatgagtttatgtcttctcctgataatatagttagagtaaccatagatgggtggcttaat
tttgagtcaacagcaattgatacttctctgatgatctacttgagggagcaattatccgca
gctatttcatacaaagtgacacattcaacagatgatgttcttcctcctgttctaaggact
gctgtggatgccttagcttgcattctgtcttgtcatggactttctggaataccacagacc
tcagatttcgttaatacactgactactactacaaatgctaccaatccaagtaaccaaact
aatcaaaatgctccaatgggtttggcatgctcaacccccacaaagcaaacagataagact
ccagaagggttctgtacagcgcttaaaaatctcaatgatgtgccttcttctggatctagc
ttatccacatcctacggtgccaaaaatccaagtgatcctacatgtcagaacactgcaaca
agtgcagcttgctcagtccagtcagcagatgaaaaagatgatgtaaccatgactgattcg
tcaccttctaaagatccaaatccagaaatgcggggtgatgcttcaaaaggggcttcctat
cagaagataaatattgctgttgggtggacctttcctgaggaaggatggatcaaggctaat
gtagatggatcctacaggcttaagcaacgtcattctagctgtgccggagcttttcgcgat
tccacaggttcatggtgctttggcttcgcacttaatcttggacccttgttctgcagagga
aaggattcagagaggttttctattcagtttatcatcttctctgagctgtggggtatcttc
actgccctcaagcttgctaaggataagggcatttcgaagctggtgatcgagtctgattgt
cattcagcagtggatgctatttttgatgaaaaggccaagggtggttatttttctcccctt
atagagtccataattgagttgatggacggaaattggatggttcgaatttccaaatgttat
cgcgaaggaaacgtagttgctgactggttgactcactatgcgtatagtcttgatatcggt
cttcatgtgctcgatgtccctcctagcggttgtgacaaactcgtagctgcggactctgct
ggagtttatcaactccgttctgtacgtgccaccccgaatgtgaaagcctga
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