Cajanus cajan (pigeon pea): 109807069
Help
Entry
109807069 CDS
T04868
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109807069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccaj03041
]
109807069
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109807069
Spliceosome [BR:
ccaj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109807069
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
Helicase_C
WHD_HA2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109807069
NCBI-ProteinID:
XP_029128952
LinkDB
All DBs
Position
11:complement(21652396..21657397)
Genome browser
AA seq
407 aa
AA seq
DB search
MVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRY
PVEINFTKAPEADYLDAAIVTSLQIHVTQPPGDILVFLTGQEEIETAEENLKQRTRGLGT
KIAELIICPIYANLPTELQAKIFEPTPEGARKIVLATNIAEASLTIDGIKYVIDPGFCKM
KSYNPRTGMESLLITPISKASAMQRAGRSGRTGPGKCFRLYTAYNFQNDLDDNTVPEIQR
SNLASVVLSLKSLGIHDLMHFDFMDPPPSEALLKALELLFALSALNKLGELTKVGRRMAE
FPLDPMLSKMIVASEKYKCSDDIISIAAMLSVGNSIFYRPKDKQVHADNAWMNFHTGNVG
DHIALLKVYNSWKETNFSTQWCYENYIQFLLEQSVQMPEFSAAGQSG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggtggatgaggctcacgaaagaacactctcaactgatattctgtttggattagtaaag
gatattgctcgtttccggcctgatctcaagttgctaatatcaagtgctacacttgatgcc
gagaaattcagtgattactttgattctgcaccaatattcaaaattccagggagacgatat
cctgttgagataaactttacaaaagctccagaggctgactacttagatgcagctattgtc
acctcacttcaaatccatgtcactcaacctcctggagatatattggttttccttactggt
caagaagaaattgaaacggctgaagaaaacttgaagcagcgaactagaggcttggggact
aaaattgccgagttaataatatgccctatatatgccaacctaccaactgaactacaagct
aaaatatttgaacccactcctgaaggagcccgaaagattgtacttgctactaatattgca
gaagcatcattgacaattgatgggatcaagtatgtcattgatcctggattttgtaagatg
aaaagttataacccgagaacaggaatggagtctttgctaataactcctatctcaaaagct
tcagcaatgcaaagagctggtcgttctggaagaactggtccaggaaagtgctttagatta
tatactgcatacaattttcaaaatgatttggatgataacactgtgccagaaatacagcgg
tctaatctcgccagtgttgtattgtctttaaaaagtcttggtattcatgacttgatgcat
tttgatttcatggatcctccaccttctgaggccttattgaaagctctggagcttctattt
gcattaagtgcactaaataagcttggggagttaactaaagtgggtagacggatggcagag
ttcccacttgatcctatgttgtcaaaaatgatagtggcttcagaaaagtacaaatgttca
gacgatatcatttctattgctgctatgctttctgttggaaactcaatattttaccgtcca
aaggataagcaagtgcatgcagacaatgcatggatgaattttcacactggaaatgtggga
gaccatattgcattgctaaaggtctacaattcatggaaggagaccaatttttcaacacaa
tggtgttatgaaaattatatacagttcttgttggagcaaagtgttcaaatgcccgagttt
tcggctgctggccaatctggctaa
DBGET
integrated database retrieval system
