Cajanus cajan (pigeon pea): 109807370
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Entry
109807370 CDS
T04868
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109807370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaj03021
]
109807370
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109807370
Transcription machinery [BR:
ccaj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109807370
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109807370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
109807370
NCBI-ProteinID:
XP_020225479
LinkDB
All DBs
Position
2:32450393..32461428
Genome browser
AA seq
966 aa
AA seq
DB search
MFSQNLILPPENPRPAAFASKPMSNEIAIAAQKPPPSILVGRFKALLKQRDDELRLSTGV
PVPPPTTDEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVPAD
QKLPSLYLLDSIVKNFGQEYIRYFSLRLPEVFCEAYRQVQSSLHPAMRHLFGTWSKVFPP
AVLRKIEAELQFSQSSTLNSVRASESPRPSHGIHVNPKYLRQLERSTVDSVGGEKLDSSG
NASNFGFVASKTQQFLSSSSRLGISSSPSRIGLDRPLSASMDEYAVENSAGRLIERESPH
PAIDYGVAKALGRDVELSDWQRKQYSGDGRNRFPTSISYSLSNGHQRQSPRALIDAYGSD
KSQETSSSKPSVVERLDRNGIDNKVLSTSWQNTEEEEFDWEDMSPTLMDHSRNNSLLSST
IGFPRERPVSVANTTLSEQDTRKSWSSGSQLPPLDDSSAVAEDAFASSAFRRAPLGHVPG
FQNQINHNLVSSQPHDAWKISHHPSNSSQHIFSNRGQARSLTSPPIDNIRNTDVNSYRIR
PAVSRMVSGLVSNVETRPSVLPVSFDIRPAVNLNVTRPPTLNPISPLQKRVRGQFEAIHT
SNAIVHHVVNKSSFMPEHSFDSVESKDSSISKIHQLPNQLPGLLSANQKNHGQAPQQFFP
SQDPSTSQFNHGSSLQGHGASISSAISNPLPVMHFPLPVQSIANNPLHLQGGAHPPLPPG
RPPAPSQMIPHSNASPFMASQQPAVGYTNLISSLMSQGVISLASQLPAQDPVGTEFNPDI
LKVRHESAVNALYGDLPRQCTTCGLRFRCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFV
SDRMWLSGAEALGTESVPGFLPAETVEERKDDEELAVPAEEDQNTCALCGEPFDEFYSDE
MEEWMYRGAVYLYAPTGTTAGMDRSQLGPIIHAKCRSESNMGASEDLGLDEKGADEEGIQ
RKRMRS
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgttctcccaaaacctgattctgccccccgaaaaccctagacccgcggcgttcgcttcc
aaacccatgagcaatgagatcgcaatcgccgcgcagaagcctcctccgtcgattctcgtt
ggccgcttcaaggctctcctcaagcagcgcgacgacgagctccgcctctccaccggcgtc
cccgtgccgccgcccaccaccgacgaaatcgtccagatttacgagctgctcctctccgaa
ctcacctgcaatttgaaacctatcatcaccgatctcaccatcattgccgagcagcagagg
gagcacgccaagggcatcgctgacgcaatttgcgctcggattctcgaggtgccagcagat
caaaagcttccttcactctatctgttagacagtattgtaaagaattttgggcaggaatac
attagatacttctctctacgtctgccagaagttttctgtgaggcatacaggcaggttcag
tctagtttgcatcctgctatgcgccatctttttggtacctggtcaaaagtctttccacct
gctgttctacgcaagattgaagctgagttgcaattttctcaatcatccaccctgaattct
gtcagggcttctgaatctcctcgaccaagtcatggcatacatgttaatccgaaatactta
cggcagttagagcggtcgactgtggatagtgttggtggtgaaaagttggattcatcagga
aatgctagtaattttggctttgtagcaagtaagacacaacaatttttatctagcagtagc
aggcttggaatatcctcgtccccttcaagaattggacttgataggcctttgtctgcatct
atggatgaatatgcagttgagaattctgctggcaggttaattgagagagagtctcctcat
cctgccattgattatggagtagccaaagcattaggtagagatgtggagttgagtgactgg
cagcgaaagcagtattctggtgatggtcgtaatcgatttccaacttctatttcatacagc
cttagtaatggacaccagcgtcaaagtccaagagctttaattgatgcgtatggtagtgac
aaaagccaagaaacttcaagcagtaagccttcggtagttgaacgtctggatagaaatggt
atagacaacaaggtgttgtcaacctcatggcagaatactgaagaggaggagtttgattgg
gaagatatgagtccaacattaatggaccatagtaggaataacagcttattgtcttcaact
attggtttccccagggaaaggcctgtcagtgtagctaatacaactttgtctgagcaagat
accaggaagagttggtctagtggatctcagcttcctccactagatgattcttctgctgta
gcagaagatgcatttgcctcttcggcttttcgccgtgcacccctgggtcatgtacctgga
ttccaaaatcaaatcaaccataatttggtctcctctcaacctcatgatgcttggaagatt
tctcatcatccgtctaactcgtcgcaacatatctttagtaatagggggcaagcaaggagt
cttacgagccctcctattgataacattcggaatacagatgtgaactcctatcggattcga
cctgcagtgtcaaggatggtttctggccttgtctctaatgtggaaacccgcccatcggtt
ttgccagtgtcttttgatataaggcctgctgtaaatctgaatgtcactcgacctcctact
ttaaatccaatatctccgttgcaaaaacgtgttaggggtcagtttgaagcaatacatact
agtaatgctattgtgcaccacgttgtaaataaatcttcgtttatgccagaacattcattt
gatagtgttgaaagcaaggattctagtatttcaaagatacatcagttgcctaatcagctt
cctggactactttcggccaaccagaaaaatcatgggcaagcaccacaacagttttttcca
tctcaggatccatcaacctcacaatttaatcatgggagttctttgcaggggcatggtgct
tctataagttcagccatatcaaatccgttacctgttatgcacttccctttaccagtccaa
agtattgcaaacaaccctttacatttacagggtggagcccacccacctttgcctccaggt
cgccctcctgctccatcccaaatgattcctcattcaaatgctagtccatttatggcaagc
caacagccagctgttggatatactaatttaattagttctctaatgtctcaaggcgtgatt
tcattggctagccagctgcctgcacaggatcctgttggaaccgagtttaatccagatatt
ctgaaggttcgtcatgagtctgcagtaaatgccttatatggtgatctccctagacaatgc
acaacttgtgggctccgattcagatgccaagaggaacacagtagtcatatggattggcat
gtgaccaagaatcggatgtctaaaagccgtaagcagaaaccctctcgaaagtggtttgtg
agtgacaggatgtggcttagtggtgcagaggcattgggaacagaatcagttccaggtttt
ttgccagcagaaaccgtagaagaaaggaaagatgacgaagagttggcagtgccggcagaa
gaggaccagaatacatgtgcattatgcggagagcctttcgatgagttttacagtgatgaa
atggaggaatggatgtatagaggagctgtatacctctatgcacccacgggaacaacagca
ggcatggacaggtcacagttgggccccattattcatgctaaatgcagatcagaatctaat
atgggcgcctctgaagatcttggactagatgaaaagggtgccgatgaagagggtatccaa
aggaaacgaatgcggagttga
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