Cajanus cajan (pigeon pea): 109807685
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Entry
109807685 CDS
T04868
Name
(RefSeq) RNA polymerase II degradation factor 1 isoform X2
KO
K13217
pre-mRNA-processing factor 39
Organism
ccaj
Cajanus cajan (pigeon pea)
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccaj03041
]
109807685
Spliceosome [BR:
ccaj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
109807685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
109807685
NCBI-ProteinID:
XP_020225886
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All DBs
Position
1:complement(14207074..14215297)
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AA seq
786 aa
AA seq
DB search
MLNWHNYLDFIELQGDFDWAVKLYERCLIVCANYPEYWMRYVDFMETKGGREVANYSLDR
ATEIYLKRVPAIHLFNARYKEQIGDVLAARAAYIQSGKERDSDFVENVISKANMEKRLGN
TESAFSIYKEALKMASAEGKLHALPLLYVHFSRLKYMSTDSVDAARDVLIDGVRTLPQNK
LLLEELIKFSMMHGGTKHMAVIDSIIADTISPRSDGSQGLNAEDAEDISNLYLEFVDYCG
TIHDIRKAWNRHIKLFPVSAREDLHKQSAISRRLLNLMDKKREEISVVMPNQASRDSSSD
SLKKDNDGLLMVKNHNTQSNDTDIYKLQIMELDDKIQENGTKLPLPVSEELRDNDPETNV
SSANLVDGKEGSTEAVKNLKSSCFESDISSEELLRQTSCGNHSSRLQTPSIENTAFPKGK
CELEPEELKPLSSPSISLNPHESSCPDSRRMVSQEECDANPESCKSNSRAVVSGHTTNQD
NSASTQDSESAQIHIEISSPYTTRHRDPRARKPLLPPRSSGNSGGSWHKTRNAGQFRRGP
KFGYRGNTHRKQHQRQQLSPQQIHPPEGVAQMAVAQGYSSQSVLQIQQSNQGQNQFQSAS
TPTDFMATDCWPMQNMQIQNTSSQSQTPANTTSHELQQATQGNGQYGYMQNGQEYNQLWQ
YYYYHQQQQQLQQQHHYIQLQQQSFQQEQSQQLQHSQLEPLQPQQLQQQVMQQQQYFQQQ
QPLQQEHSVHQQQQPSTQSSSHPIADQGQAIVTSQSHGGILSQQSDKLGSVSSPVVHHPQ
EKSTQE
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgcttaattggcataattatctggattttattgaacttcaaggggactttgactgggct
gtgaaactttatgagagatgcttgattgtttgtgccaactatcctgaatactggatgcgt
tatgtggacttcatggaaaccaagggaggaagagaagttgcaaactattctttagaccga
gcaactgaaatttatttgaagagagtgcctgcaatccatttgttcaatgccaggtataag
gaacaaataggagatgttttagctgctcgagctgcatatattcagagtggtaaagagaga
gattcagactttgtggagaatgttatatcaaaagctaatatggaaaaacgtttgggaaat
acagaatcagctttcagtatatacaaagaagcactaaaaatggcatcagctgagggaaag
ttacatgccctccctcttttatatgttcatttctctcggctaaaatatatgagcacagac
agtgtggatgctgccagagatgtattgattgatggtgtcagaactttgcctcaaaacaaa
ttgcttctggaggagttgataaagttctcaatgatgcatggggggacaaagcacatggct
gtaatagattcaattattgcggatacaatatctccaaggtcagatggatctcaaggtttg
aatgcagaagatgcagaggatatatcaaacttatacctagagtttgtggactattgtgga
accatacatgatataaggaaggcgtggaatcggcacataaaattatttccagtctctgcc
cgggaagatttacacaagcaatctgctataagtagaagattgctcaatttgatggacaag
aagagagaagagatttctgttgtcatgcctaatcaagcatctagagattctagttctgat
tcgctgaaaaaagacaatgatggattattgatggttaaaaatcataatactcagtctaat
gatacagatatatacaaacttcaaattatggaattagatgacaaaatacaagaaaatgga
acaaaattacctctgccagtttctgaagagctgagagacaatgatcctgaaactaatgtg
tcatctgccaatttagtggatgggaaagagggatcaacagaagctgttaagaatttaaaa
agtagttgttttgaatctgatatttcatcagaggagttattacgtcaaacatcctgtgga
aaccattcctcacgtttgcaaacaccctcaattgaaaacacggcttttcctaaagggaag
tgtgagcttgagcctgaagaattgaagccactttcttcaccaagcatatcattgaacccc
cacgaaagctcgtgtcctgactcacgacgaatggtgtctcaggaggagtgtgatgcaaat
ccagaaagctgcaagtcaaatagtagagcagttgtttctggtcataccacaaatcaagac
aactctgcaagcactcaagattctgagtctgcccaaatccacattgaaataagcagtcca
tatacaacacgccatcgagacccaagagcaagaaaaccacttctaccacctcggtcttct
ggaaatagtggtggaagctggcataaaacgagaaatgctggacaatttcgtaggggtccc
aaatttggctacaggggaaatacgcatagaaaacagcaccaacggcaacaactgtctcca
cagcagattcatccacctgaaggggttgcacaaatggctgtagctcaaggttactcctct
caatctgtattgcaaattcagcaaagcaatcaaggacaaaaccagtttcaatctgcttct
actccgactgatttcatggcaactgattgttggcctatgcaaaatatgcagatacagaac
acttcatctcagtctcaaacacctgccaataccacatcacatgaattacaacaagcaacg
caaggcaatggacaatatggatatatgcagaatggccaagaatataatcagttatggcaa
tactattactatcaccagcagcagcagcagctgcaacaacaacatcattatattcaatta
cagcagcaatcattccagcaggaacagtcacaacaactccaacatagtcagctggaacct
cttcaaccacaacagctgcaacaacaggttatgcagcagcagcaatactttcaacagcag
caacctctgcagcaagaacactctgttcaccagcagcagcagccatcaacacagagcagc
agtcatcctatagcagaccaagggcaggcaatcgtgacatcgcagagccatggaggaata
ttatctcagcaatcagacaaacttgggtcggtttcttctccagttgtgcatcatcctcag
gagaaatctacccaagagtga
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