Cajanus cajan (pigeon pea): 109808028
Help
Entry
109808028 CDS
T04868
Name
(RefSeq) WD repeat-containing protein 43 isoform X1
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
109808028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccaj03009
]
109808028
Ribosome biogenesis [BR:
ccaj03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
109808028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp12
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_1st
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_ACSF4
WD40
Beta-prop_IFT140_1st
Beta-prop_HPS5
EIF3I
WD40_MABP1-WDR62_1st
Hira
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR36-Utp21_2nd
Lactonase
Motif
Other DBs
NCBI-GeneID:
109808028
NCBI-ProteinID:
XP_020226418
LinkDB
All DBs
Position
11:1785152..1792032
Genome browser
AA seq
614 aa
AA seq
DB search
MEKDELKKHVLTAFTPNGDYVAILSANGIAKIWNTNTGHLLAEWKPSDEDHDIRYSCIAC
SFIGKKRRKEQRTLLLALGSIDGSVLAVDVSTGERKLTTSHPGGIGGLSFANKGCLLRIV
GHSGMAYEVNTQTGDVLKEFKISKKSITSLAFSHDEKYLAIVSSKLRVINWEIGKEVLKS
PNDLVNVQHISISNDAKNLVTADFEGKLLQVWKCDNSGNVSRGPTLPIRHPPLVLDCHCG
CNNEEDLVVLAVTGRGSAYIWNLNASSEDQIQPIETDKENDENSKERHTSIIASRLQAVE
EDKQMKALVAHGSVDHPQFSVLNISNSGENIVLIVGDEMDSVQRHDSPSDKAITMESKKT
KKRQAASDPDLPTTTDEVDLAFNVDQPEAAEGVLLDDDLNEPTMGEKLASLSLLEEDKSR
SDKEQVSSLSANPPSADSVHVLLKQALNADDRTLLLHCLYTQDEKVIRKSIAQLNPSNVL
KLLHSLISIIESRGAILSCALPWLKCLLLQHASGIMSQESSFKALNTLYQLIESRVSTFK
SAIQLSSCLDILYTGVIDEEDEDDIGPVIFEDKESDEESEDAMETDQNNTDEEQSEAVLD
HVSDIDASDDMMGD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggacgaattgaagaaacatgtcctcactgctttcactcctaatggggactat
gttgctattctgtctgccaatgggattgctaaaatttggaacacaaacactggacatttg
ttagcagagtggaagccatcagatgaagatcatgatattcgttattcttgtattgcatgt
agtttcattgggaaaaagcgtagaaaagaacaacgaactttgttattagctctgggttca
attgatggaagcgttctggctgttgatgtttctactggtgagagaaagttgactactagc
catcccgggggtattggcggactttcatttgcaaataaaggatgtcttcttcgcattgtt
gggcatagtgggatggcatatgaggttaatactcaaacaggagatgttttaaaggaattt
aaaatctcaaaaaagtccatcacttctctggctttctcacatgatgaaaaatatttagct
attgtcagctctaaactacgggttataaactgggaaattgggaaagaggttctgaagtcc
cctaatgatttggtaaatgtacagcacatttctatatccaatgatgccaaaaatttagtt
acagcagattttgagggtaaacttcttcaagtttggaagtgtgataattcaggaaatgtg
agtagaggtccaacacttcccataaggcatcctccattagttttggactgccactgtggt
tgcaataatgaagaagatttagttgttttggcagttaccggtagaggttctgcttatata
tggaatttgaatgcctcctccgaagatcagatacagccaattgaaacagataaggaaaat
gatgaaaattcaaaagaaaggcacacttcgattattgcatccagattacaagctgtagag
gaagacaaacagatgaaagctcttgtggctcatggctctgtagatcatccacagtttagt
gtcttaaatataagcaattcaggggagaatatagtattaattgtaggagatgagatggat
tctgttcagcggcatgacagcccttctgacaaagcaataacgatggaaagcaagaaaact
aaaaaaagacaagcagcatctgatcctgatcttccaaccacaactgacgaggttgattta
gcatttaatgtagatcaaccagaggctgctgaaggtgtccttctcgatgatgatttgaat
gagccaacaatgggagagaaacttgctagtctaagtttgctggaagaggacaaatccagg
agtgataaagagcaagtatcttctctctcagcaaaccctccaagtgcagactctgtacat
gttttgcttaagcaagcattaaatgctgatgatcgcacccttctgctacattgcctgtat
acgcaagatgagaaggttattagaaagtcaattgcacagttgaacccatcaaacgtcctc
aaacttctacactctcttatatccattattgaatctaggggtgcaattttgtcgtgtgct
cttccatggttgaagtgtctacttctacagcatgcaagtggaataatgtcccaggaatct
tcatttaaagctttgaacactttgtatcaactaattgagtctagagtctccacttttaaa
tctgccatccaactctcgagttgcttagacatcctatacacaggggttatagacgaggaa
gatgaagatgatataggaccagttatctttgaggataaggaaagtgatgaagaatctgag
gatgccatggaaactgaccaaaataacacagatgaagaacaatcagaagcagtattggat
catgtcagtgacatagatgcaagtgatgatatgatgggagattaa
DBGET
integrated database retrieval system
