Cajanus cajan (pigeon pea): 109808242
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Entry
109808242 CDS
T04868
Name
(RefSeq) WD repeat-containing protein 75 isoform X1
KO
K14552
NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
109808242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccaj03009
]
109808242
Ribosome biogenesis [BR:
ccaj03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
109808242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR75_1st
Beta-prop_WDR75_2nd
Beta-prop_THOC3
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
Beta-prop_WDR3_2nd
Beta-prop_IFT140_1st
Beta-prop_CAF1B_HIR1
EIF3I
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_WDR41
Beta-prop_Nup120_160
Ribosomal_L2_N
Choline_sulf_C
Motif
Other DBs
NCBI-GeneID:
109808242
NCBI-ProteinID:
XP_020226734
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Position
11:complement(40435597..40444564)
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AA seq
794 aa
AA seq
DB search
MISGGQNYVSSAPVFSNDAKRLLVCTGSTVSVFSTATGSRVSSLEGHSGPVTALVVVPDS
STLLSFCWTASVDGTIRHWDFSVPECVKIIDLHFPVFSMVVPSLLSPREENDAKTRPDVF
AYVSVQNPNAEANCLSPRCGQIRKCNLTNFHAVSSLILKETERPESLTISPSGKFLGIKD
KRKLHIWKVPKVDSDSAVSKKITLHHSKTITVLALHPMERIVAAGDVTGRILIWRGFGAQ
KFMHSGGLVNGRSTNDEEDKPGVRENDDAESCSTWHWHPSGVRLLSFSSDGAYLYSGGKE
GVLVLWQLDTGKKNFLPRIGSPLLYFVDSPDPSLSSISCADNQIHILKMPSMEIIRSISG
IKPCLSSQDICEGLCSRAAFDYTSGLVAVQTENYGIQFYSLFANRGLYEVQVCERNHQPV
DEVTVVVSLVELSVDGSMMGTVEVKLPEDGVGGLVCLKFWDLDDNKRFSVSTLIYEPHRD
AHISAIAFNPTRRMAVSLSYGGDFKIWVCKEEIKQKGQMLQNSGWMCHAVGSYKNKAMRA
AAFSADGSVLAVAADNVITLWDPNNNVLVAVVGETLMPITSLGFAGKSYYLVSVCHGSKP
QLSVWSMSRLAAFWSYKIQIEAVSFTIDFSYFAVLALLPESNEYAFKGDGIILLFNVTNP
TPMASWSVTKAKGGGLAFLKGYPSEQLQSLLAYINGDREYVIFHPHSKEAFELSRIRQDD
HVLEETGQFGYTSIYGELPKFDPKRNLTSSISSAASERPWETIFSGSSHMLPPLTKLCSE
FLESLLEKKTPTVE
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgataagcggaggccaaaactacgtttcttccgctcccgtcttctccaacgacgccaag
cgcctactcgtctgcaccggctccaccgtctccgtcttcagcaccgccaccggctcccgc
gtttcctccctcgaaggccactccggccccgtcaccgccctcgtcgtggtccccgactcc
tccaccctcctctccttctgctggaccgcttccgtcgacggcaccattcgccactgggac
ttctccgttcccgaatgtgttaagattattgaccttcacttccccgtcttctcaatggtg
gtgccttcgttactgtctccgcgggaagaaaacgacgcgaagacgaggcctgatgttttt
gcttacgtgtctgttcagaatccgaatgcagaggccaattgtctatcacctcgttgtgga
cagatcaggaagtgtaatttgacaaattttcacgctgttagcagcttaatcctgaaagag
actgaacgaccagaatctttaaccattagtccctctggaaaatttctgggtataaaagac
aagcggaaacttcatatatggaaagttcctaaagtggactctgactctgccgtgtctaag
aagattaccctgcatcattcaaagacaattacagttcttgcactccatccaatggagaga
attgtggctgctggtgatgtaaccggaagaattttaatttggagaggatttggtgctcag
aagttcatgcacagtggtgggctagtgaatggaagatcaacaaacgatgaggaagataag
cctggggtaagggaaaatgatgatgctgaatcatgctccacttggcattggcacccttct
ggagtgaggcttctgtctttctcttcagatggagcctacctctactcaggtgggaaggaa
ggagttcttgtgctttggcagttagacacgggaaaaaagaattttttaccaagaattgga
tctccacttctgtattttgtagattctcccgatccatcactttcctcaatatcttgtgca
gataatcaaattcatatattgaagatgccttcaatggaaataataaggtctatttctggg
atcaagccttgtttatcttcgcaagatatatgtgaaggtctttgcagccgagctgccttt
gactacacttctggtttagtggctgtacaaacagagaactatggcatccaattctacagc
ttgtttgctaatcgtggactttatgaggttcaagtctgtgaaagaaatcatcaaccagtt
gatgaggtcacggtggtggtgagcttggtggagctgtctgttgatggctctatgatgggt
acagttgaagtcaagcttcctgaagatggagtgggaggtcttgtttgtctgaagttttgg
gatttggatgataacaagagattttcagtatcgactcttatttatgaacctcacagggat
gctcatatttctgctattgctttcaatccaactcgtcgtatggctgtcagcttatcctat
ggtggagatttcaagatatgggtctgcaaagaagagattaagcaaaaaggccagatgctt
cagaattctggttggatgtgtcacgctgttgggtcatacaaaaataaagccatgagagct
gctgctttttcagctgatggatctgtgctggcagttgcagcagacaatgttattacattg
tgggatcctaataataatgtgcttgttgctgttgtaggagaaactctgatgcctataacg
agccttggctttgctggaaaatcatattaccttgtgtctgtatgtcatggttcaaaacca
cagctgtctgtttggagtatgtcgaggcttgctgcattttggtcatacaaaatccaaata
gaagctgtctcctttacaatagatttttcatattttgctgtccttgctctccttcctgaa
tcaaatgaatatgcatttaaaggagatggaataatcttattattcaatgtgacaaatcca
actcccatggcttcctggtctgtaactaaggccaaaggaggggggcttgcttttctaaaa
ggatatccatctgaacaattacagtcactgcttgcatatataaatggtgatcgtgaatat
gtcatctttcatccacatagcaaagaagcctttgagcttagtaggattaggcaggatgat
catgtgttggaagaaacaggacaatttggatacacgtcaatttatggagagctacccaag
tttgatccaaaaaggaatctgacttcatcaatttcatctgctgcttccgagaggccttgg
gagaccatatttagtggatcatcacatatgttgccacccctcactaagttgtgctcggaa
tttttggagtccctgctggagaaaaagacaccaactgtagaatga
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