KEGG   Cajanus cajan (pigeon pea): 109808362
Entry
109808362         CDS       T04868                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
ccaj  Cajanus cajan (pigeon pea)
Pathway
ccaj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccaj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109808362
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccaj03019]
    109808362
Messenger RNA biogenesis [BR:ccaj03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     109808362
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_WDR19_1st Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_EIPR1 Beta-prop_IFT122_1st NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_Vps41 WDR90_beta-prop_4th eIF2A Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Ge1_WD40 Beta-prop_DCAF12 Beta-prop_VPS8 Beta-prop_WDR11_1st Beta-prop_WDR41 Beta-prop_IFT140_1st Beta-prop_HPS5 Cytochrom_D1 Nbas_N CFAP43_N Beta-prop_WDR75_2nd BBS2_Mid WDR54 Beta-prop_pof12 Tricorn_2nd PD40 PROPPIN Beta-prop_WDR11_2nd
Other DBs
NCBI-GeneID: 109808362
NCBI-ProteinID: XP_020226934
LinkDB
Position
11:41455883..41459995
AA seq 321 aa
MKLGGIKSKENAHDDSVWAVTWVPATANRPPLLLTGSLDETVRLWRSDDLVLERTNTGHC
LGVASVAAHPLGSVAASSSLDSFVRVFDVDSNATIATLEAPPSEVWQMRFDPKGSILAVA
GGGSASVKLWDTSSWQIIATLSIPRPEGPKPSDKSGSKKFVLSVAWSPDGKRLACGSMDG
TISVFDVPRAKFLHHLEGHFMPVRSLVYSPYDPRLLFTASDDGNVHMYDAEGKALVGTMS
GHASWVLCVDVSPDGAAIATGSSDRSVRLWDLSMRASVQTMSNHTDQVWGVAFRPPGGSD
VRGGRLASVSDDKSISLYDYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaagctgggtggaatcaaatccaaggagaacgcgcacgatgattccgtgtgggcggtc
acatgggtacccgccaccgccaaccgcccaccgctcctcctcaccggttctctcgatgag
accgtcaggctctggcgctccgacgacctcgttttggagcgcaccaacaccggccactgc
ctcggcgtcgcttccgtcgccgcccaccccctcggctccgtcgccgcctcctcctccctc
gacagctttgtccgcgtcttcgacgtcgactccaacgccaccatcgccacgctcgaggct
cccccctccgaagtctggcaaatgcgcttcgatcccaagggatccattctagcagttgct
ggtggaggtagtgcatcagtcaagctttgggacacttcctcatggcaaatcattgcgact
ctatcaattcctcgtccagaaggacccaagccctcggacaagagtggcagcaagaaattt
gttctgtcagttgcatggagtcctgatgggaaacgacttgcttgtggttcaatggatggc
accatttctgtttttgacgtgccacgtgccaaatttttacatcaccttgagggtcacttc
atgcctgtgcgatctcttgtttattctccttatgatccaaggctgctgtttacagcttcg
gatgatggtaatgtccacatgtatgatgctgaggggaaagcgttagttgggaccatgtca
ggtcatgctagttgggtattgtgtgtggacgtgagcccagatggggcggccattgccacg
ggttcaagtgatagatctgtaaggctatgggatcttagcatgagggcgtctgtacagacg
atgagcaaccatacagaccaggtatggggtgtggcatttagaccacctggagggagtgat
gtgcgaggtggtcggcttgctagtgtatcagatgacaagagcatatcgctgtatgattat
tcctga

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