Cajanus cajan (pigeon pea): 109808645
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Entry
109808645 CDS
T04868
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
KO
K14962
COMPASS component SWD2
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109808645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109808645
03036 Chromosome and associated proteins [BR:
ccaj03036
]
109808645
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109808645
Chromosome and associated proteins [BR:
ccaj03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
109808645
COMPASS/SET1 complex (yeast)
109808645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
ANAPC4_WD40
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_NUP159_NUP214
WD_LRWD1
Beta-prop_RIG_1st
Methyltransf_13
Motif
Other DBs
NCBI-GeneID:
109808645
NCBI-ProteinID:
XP_020227299
LinkDB
All DBs
Position
11:39264826..39274640
Genome browser
AA seq
343 aa
AA seq
DB search
MTTTTSLSELDDDLVRSMSIGAVFSDFGGKIHSIDFHRTDDLLVTASEDDTVRLYDIANA
KLLKTTYHKKHGTDRICFTHHSSSVICSSKYNLESTGESLWYLSMYDNRCLRYFKGHKQR
VVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPAVAYDQQGLVFAVAMEGG
AIKLFDSRSYDKGPFDTFLVGGDTSEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC
GFSLEPSPGTPIEATFTPDGKYMVAGSGGGTMHAWSIEMKNEVACWSSHIGVPSCLKWAP
SRAMFAVASSVLTFWIPNNDSKLKTEYGGTDIEAGAPPQPLLH
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgacgacgtctctttccgaacttgacgatgatttagttcgcagcatgtccata
ggagccgttttctccgacttcggtgggaaaatacattcgattgatttccatagaacggat
gatttacttgtcacggcaagtgaggatgacacagtgcgactatacgacatcgctaatgct
aagttgctgaagaccacttatcataagaaacacggtaccgatcgtatatgttttactcat
cattcgagctctgttatatgctcttcaaagtacaatttggagtctactggagaatcattg
tggtatttatcaatgtatgataatcgctgcctacgatacttcaaagggcataagcagaga
gttgtttctctctgcatgtctccaatcaatgatagcttcatgtctggttctctagaccac
agtgtcaggatatgggatcttcgagtaaatgcttgccagggcattttacgtcttcgtggt
agacctgctgttgcctatgaccaacagggcctggtctttgctgtagcaatggaaggggga
gctattaaattgttcgattctcgttcatatgacaagggtccctttgacacctttctagtt
ggtggtgacacatctgaagtttgtgatatcaaatttagtaatgacggcaaatcaatgctt
ctgactactaccaataacaatatttatgttcttgatgcatatggaggagagaagcgctgt
ggatttagtttggaaccgtctcctggtactccaatagaggctacatttaccccggatgga
aagtacatggtggcagggtcaggagggggaaccatgcatgcttggagtattgagatgaaa
aatgaggtggcatgttggagcagccatattggcgtgccgtcgtgcttgaagtgggcccct
agcagggccatgttcgctgttgcttcaagtgttctcacgttttggatacccaataatgat
tcaaagctgaaaaccgagtatggtggcacagacattgaagctggagctccgccccagcca
cttctccattga
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