Cajanus cajan (pigeon pea): 109809212
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Entry
109809212 CDS
T04868
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03013
Nucleocytoplasmic transport
ccaj03015
mRNA surveillance pathway
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109809212
09122 Translation
03013 Nucleocytoplasmic transport
109809212
03015 mRNA surveillance pathway
109809212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109809212
03041 Spliceosome [BR:
ccaj03041
]
109809212
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109809212
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109809212
Spliceosome [BR:
ccaj03041
]
Complex C
Other components
EJC/TREX
109809212
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109809212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
109809212
NCBI-ProteinID:
XP_020228049
LinkDB
All DBs
Position
11:complement(1915814..1920566)
Genome browser
AA seq
426 aa
AA seq
DB search
MGELKDTEAYEEELLDYEEEDDKAPDSAKPDAEAGKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQVDPVAGQVAALVLC
HTRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKIHKELLKNECPHIVVGTPGRILALA
RDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVNRA
GELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTSDSEVLNQVQSRFEVDIKELPEQIDT
STYMPN
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaattgaaggacaccgaggcttacgaggaagaactactcgattacgaagaagaa
gatgataaagctcccgattctgctaaacccgatgctgaagcgggcaagaagggttatgtt
ggcatccatagttcgggatttcgagacttcctgttgaaaccagagcttctacgtgccatt
gtagattcaggatttgagcatccgtcagaagtgcaacacgaatgcatccctcaagcaatc
ttaggaatggatgtcatttgccaagcgaaatctgggatgggaaagactgctgtttttgtt
ctttcctcacttcagcaagttgatcctgttgctggtcaagttgctgctcttgttctttgc
cacacaagagaactggcttatcagatttgccatgagtttgagagattcagcacatatctt
cctgatataaaggctgctgttttctatggtggtgtcaacatcaagattcacaaagaattg
ctcaagaatgaatgcccacatattgttgttggaactcctgggaggattcttgccctggct
agagataaggaccttggtttaaagaatgtgaggcattttatacttgatgagtgtgacaag
atgctcgaatcacttgatatgagaagagatgtgcaagagattttcaaattgactcctcat
gataaacaagtgatgatgttttcggctacactcagtaaagagatccgacctgtttgcaag
aaatttatgcaagatcccatggaaatttatgtagacgatgaggccaaattgacacttcac
ggtcttgtgcagcactatatcaaattgcaagagtcagagaagaatcggaagttgaatgat
cttcttgatgctctggacttcaaccaagtagttatttttgtcaaaagtgttaatagagct
ggagagttgaacaagctgcttgtggaatgtaacttcccatccatctgcatacattctgca
atgtcacaggaagagagattgaaacgatacaagggcttcaaagaagggaagcaaaggatt
ctcgtggcaactgatttagttggaagggggattgacatagaacgtgttaatatagttatt
aactatgacatgcctgattctgctgatacttacttgcacagggtgggaagagctggtaga
tttggcacaaaggggcttgccattacttttgtgtcctctacttcggactctgaggttctt
aatcaggtgcaatctaggtttgaggttgatataaaggagcttcctgaacaaattgacact
tcaacatatatgccgaattga
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