Cajanus cajan (pigeon pea): 109809285
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Entry
109809285 CDS
T04868
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4 isoform X1
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03022
Basal transcription factors
ccaj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109809285
09124 Replication and repair
03420 Nucleotide excision repair
109809285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaj03021
]
109809285
03400 DNA repair and recombination proteins [BR:
ccaj03400
]
109809285
Transcription machinery [BR:
ccaj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109809285
DNA repair and recombination proteins [BR:
ccaj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109809285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
109809285
NCBI-ProteinID:
XP_020228130
LinkDB
All DBs
Position
11:14229045..14234270
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AA seq
292 aa
AA seq
DB search
MTSAPSKLYADDVSLLVVTLDTNPFFWSTFPFPFADFLSQVLAFLNSILLLGQLNQVIVI
ATGCNSCGYVFDSTSDKNHGSTTGTMPALYSNLLHNLDQFVARDQQLASPHTPGTVPSSL
LSGSLSMALCYIQRAFRSGPMPPQPRILCLQGATDGPEQYVAIMNAIFSAQHSVVPIDSC
YIGSNNSAFLQQASYITGGIYYKPPQLDGLYQYLSTVFATDLHSRAFLRLPKSVGVDFRA
SCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQLDASAADRKRKA
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgacttctgctccttcgaaactctacgcagatgacgtgagtctcctcgtggtcacgcta
gacaccaatcccttcttctggagcactttccccttccccttcgccgacttcctctctcaa
gtactcgcctttctcaactccatcttgctcctcggccagctcaaccaggtcatcgtcatc
gccaccggatgcaactcctgcggctacgttttcgattccacctccgacaagaaccacggt
tccaccaccggaacaatgcccgcgctttattccaatttgcttcacaatctcgaccagttc
gtcgctagggaccagcaattagcgtcgcctcacacaccgggaactgttccttcttcgctc
ctgtcgggctccttgtccatggcgctttgttatatacagagagcttttcgttctggaccc
atgcctcctcagcctcggattttatgtttgcaaggtgctactgatggaccagaacagtac
gtggcaatcatgaatgccatattctctgcacagcattctgtggttcctatagattcttgt
tatattggttcgaacaattctgcattcctccagcaggcttcatacataaccggtggaata
tattacaagcctccccaattggacgggctttatcaatatctttctacagtgtttgcaact
gatttgcattcacgtgcatttttacggcttcctaaatccgtgggtgtggattttcgtgcc
tcgtgcttctgccataagcaaacaattgacatgggctatgtatgttctgtgtgcttatcc
atattctgcgagcatcatgataagtgttcaacctgtgggtctgtatttggccaggctcaa
ctagatgcctcagcagccgaccggaaaagaaaggcttga
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