Cajanus cajan (pigeon pea): 109809310
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Entry
109809310 CDS
T04868
Name
(RefSeq) ribosomal RNA small subunit methyltransferase nep-1 isoform X1
KO
K14568
rRNA small subunit pseudouridine methyltransferase Nep1 [EC:
2.1.1.260
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
109809310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccaj03009
]
109809310
Enzymes [BR:
ccaj01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.260 rRNA small subunit pseudouridine methyltransferase Nep1
109809310
Ribosome biogenesis [BR:
ccaj03009
]
Eukaryotic type
90S particles
Other 90S particles
109809310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EMG1
Motif
Other DBs
NCBI-GeneID:
109809310
NCBI-ProteinID:
XP_020228161
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All DBs
Position
11:complement(43786898..43789983)
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AA seq
244 aa
AA seq
DB search
MTMPSECDHSTRDEDDHDSMPQLPSIRPPPHSHNSKQGVYFILEKASLVAAFVGKKYQIL
NPDEHANFLRRKNMNPYDFRPDIVHEALLQIMSSRLCLSGRLRAVFIRTDEGILIRVAPQ
TQIPKTLGSFCNMMMELLQKFSIKSKGGHGKLLKLIQNPVTNHLPINSLKIGLSFSSTKA
VQLRDYVSGANCDENLVFVVGAMAHGKIDVDYIEDLISVSGYPLSAGTCLRRICIALERS
WNIQ
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atgactatgccttcagaatgcgatcattcaacaagggatgaagatgaccatgattcaatg
ccacaactcccctcaattcggccaccacctcatagccacaattcaaaacaaggagtgtat
ttcattcttgagaaggcctcactagttgctgcttttgttggcaaaaaataccagattttg
aatccagatgagcatgccaatttcttgcggaggaaaaacatgaatccttatgattttagg
cctgacattgttcatgaggctctccttcaaattatgagtagtcggctttgcctgtctggt
agattacgtgctgtattcatcaggacagatgaaggtattcttatcagagttgcaccacaa
actcagataccaaaaacactaggaagcttttgtaatatgatgatggagttgctgcaaaag
ttcagtatcaaatcaaaaggtggtcatggaaagcttttaaagttaattcaaaatcctgtg
actaatcacttacctatcaactcccttaaaataggtctttcttttagttcaacaaaggca
gttcaattaagggactatgttagtggtgctaattgtgatgagaaccttgtattcgtggtt
ggtgcaatggctcatggaaaaattgatgttgactacattgaagatcttatatcagtttca
ggttatccactgagcgctgggacgtgtcttaggaggatttgcatagcattagagagaagt
tggaatatccaatga
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