Cajanus cajan (pigeon pea): 109809369
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Entry
109809369 CDS
T04868
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109809369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccaj03041
]
109809369
03009 Ribosome biogenesis [BR:
ccaj03009
]
109809369
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109809369
Spliceosome [BR:
ccaj03041
]
Complex A
U2 snRNP components
U2 related factors
109809369
Complex B
109809369
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
109809369
Ribosome biogenesis [BR:
ccaj03009
]
Eukaryotic type
90S particles
Helicases
109809369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ResIII
T2SSE
SRP54
ABC_tran
AAA_7
AAA_30
FtsK_SpoIIIE
AAA_33
TsaE
AAA_29
Motif
Other DBs
NCBI-GeneID:
109809369
NCBI-ProteinID:
XP_020228243
LinkDB
All DBs
Position
11:complement(25581717..25585472)
Genome browser
AA seq
727 aa
AA seq
DB search
MGTERKRKVSLFDVVDDPAAKMAKTNGGRADGGCAVANNLINRWNGKPYSQRYHEILEKR
KTLPVWHQKEEFLQVLKDNQTLILVGETGSGKTTQIPQFVLEAVDIETPDKRRKMMVACT
QPRRVAAMSVSRRVAEEMDVNIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLL
ERYKVIVLDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFNGAPLMK
VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPSGDILVFLTGEEEIEDACRKINKE
VSNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPLKEGGPPGRKIVVSTNIAETSLTID
GIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFN
NDLQPQTYPEILRSNLANTVLILKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD
DGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAAD
EAKARFGHIDGDHLTLLNVYHAYKQNNEDSSWCYDNFVNHRALKSADNVRQQLVRIMARF
NLKLCSTDFNSREYYVNIRKAMLAGYFMQVAHLERSGHYLTVKDNQVVHLHPSNCLDHKP
EWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLERLYKKREKEK
EEARSRK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaagtgagcctgtttgacgtggtggacgaccctgccgct
aagatggccaaaaccaacggcgggcgcgccgacggcggctgcgccgtcgccaacaacctc
attaaccggtggaacgggaagccttattcgcagaggtaccacgagattttggagaagagg
aagaccctccccgtgtggcaccagaaggaggagttcttgcaggttttgaaggataaccaa
actctcattctcgttggcgaaaccggtagtggcaaaaccactcagattcctcaatttgtt
ttggaagctgtggatattgaaacccctgataaacgtaggaagatgatggttgcgtgtact
cagcctcgtagagtggctgcaatgtctgtttctaggcgtgtggctgaggagatggacgtg
aatattggagaagaggttggttacagcatcagatttgaggattgcagtagtgcaaggact
gttttgaagtatctcacggatggtatgcttttgagagaagcaatgacggatccacttttg
gaacggtataaagtcattgttcttgatgaagcgcatgagaggactttggctacagatgtg
ctatttggtcttcttaaggaagtgcttagaaatagacctgacttgaagttggttgttatg
agtgctacacttgaagcggagaagttccagggctattttaatggagctcctcttatgaag
gttcctggaagactacatccggtggaaattttctatacgcaggaaccagaaagagattac
ttggaggctgctattaggacagtggtgcagatacatatgtgtgaaccttctggagatata
cttgtttttctcactggagaggaagagatcgaggatgcgtgccgcaaaataaacaaagaa
gtctcaaatatgggagaccaggtgggccctgtgaaagtggtgcctttgtattcaactctt
cctcctgctatgcagcagaagatttttgagccagcgccacctccactaaaggagggaggg
cctcctggaaggaagattgtggtatcaacaaacatagcagaaacttccttgacaattgat
ggtatagtctatgttattgaccctggatttgctaagcagaaggtttataaccctcgagtc
cgtgttgagtcattgttggtgtctccaatatcaaaggctagtgcacaccagagatctgga
cgtgctggaagaacacaaccagggaaatgttttagactttatactgaaaaaagtttcaat
aatgatctgcagccgcagacctatcctgaaattttgagatctaatcttgccaacacagtt
cttatcttaaagaaactgggtatagatgatttagtccattttgatttcatggaccctcct
gcccctgagaccttaatgcgcgcgttggaagtgttgaattacttgggtgcactggatgat
gatggtaacttaacaaagctgggtgagattatgagtgaatttccgctggaccctcagatg
tcaaagatgcttgttgtcagtccagaattcaactgttcaaatgagattctttccatttct
gccatgctatcagtacccaattgctttgtccggcctagggaggcacaaaaagcagcggat
gaagcaaaagctaggtttggacacattgatggagatcatctcacactcttgaatgtatac
catgcctacaagcaaaataatgaggattcttcttggtgctacgataacttcgttaatcat
agggcgttgaaatcagctgataatgttagacaacaactagtgcgtatcatggctcggttt
aacctgaagttatgcagcactgacttcaatagccgtgagtactatgtcaacataagaaag
gcaatgctggcaggatatttcatgcaggtggctcacctggagcgatcaggacattacttg
acagtgaaagacaaccaggtggtgcatttgcatccgtcaaattgcctggaccataagccg
gagtgggtaatatataatgaatatgttcttaccagtcggaattttattcgaactgtgaca
gatatacgtggggaatggttagtggatatagccccacattactatgatttgtcgaatttt
ccacaatgtgaagccaagcgtgttcttgagaggctttacaagaagcgggagaaggaaaag
gaggaagcaaggagtcgtaaatga
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