Cajanus cajan (pigeon pea): 109809507
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Entry
109809507 CDS
T04868
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109809507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109809507
Enzymes [BR:
ccaj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109809507
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109809507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
109809507
NCBI-ProteinID:
XP_020228429
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All DBs
Position
11:8018286..8022039
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AA seq
617 aa
AA seq
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MASVLQLRSRRSLCTTSSSKWRVKQVTTSNFHESLEEIKTHISASDFVAISLGKTGSPSA
PSWLRPLPFDTAQTAYSKARRSAHRFQLLHFAVCPFSVTHSNHLIAHPYNFVLFPRDELK
MGMPAYSFSCQTSLLASMARQGFDFNACVYDGISYLSRAQESVARIRLGTALPSHPVMKS
STPSTVADTVFVERIRTRIKHWRNSCKSSDTNTSKHEELINSLKNIVLGSELFRSRPCMT
IDVCSERQVQLILEMLVDYSDDLLPLPIPTKSGTTNAVRIVLANSKEDKDLLERELQNFE
EEESKKIRGFREVIDLISASQKPVISHNCLNDCTLIHSKFIAPLPPEVDEFVSSLRSVFP
KVLDINYLMKKHGTMRKVTNIPSAMSYLNNHFFAPVDLEIPDQATVKEGKIHGLNALRLC
YLFMKLCSILKISPNVTESGNKHLAPELEDFTNVFHPCSAPIQDSSNGDVGVWTNNTKRV
GCEQLVFLWGFKFGMTAGMLKSVLRSSHDIFSGEFDVKLVDKSCAIVVFWQSGVSKEFMD
VMNSEEIRGDLKELVSDGLRVTGYDTYNTICRLGLWEMDLAVSLERALESSSCENNCEKK
SSEIHWYNDNVINLDDL
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggcctcagtgttgcagttacggagtcgtcgttccctctgcaccacctcgtcctccaaa
tggagggttaagcaggtgacaacctccaacttccacgaatccctggaagagataaagacg
cacatctccgcctccgacttcgtcgccatatcattgggaaaaacgggctctccctcggcg
ccgtcgtggctccgccctctccccttcgacaccgcccaaaccgcctactccaaggcccgc
cgctccgcccaccgcttccagctcctccacttcgccgtctgccccttctccgtcacccat
tccaaccacctcatcgctcacccttataatttcgtgttgtttccgagagatgagttgaag
atggggatgcctgcttacagcttttcgtgccagacttcgcttctcgcctccatggcgcgc
caggggtttgatttcaatgcttgcgtctatgatggcatatcatatctatctagagcacaa
gagtcggtagctagaattcgtcttggaactgctctcccttctcatcctgtaatgaaatct
tctacaccctctactgttgccgatacagtttttgttgagaggattagaacacgcattaaa
cattggagaaactcatgtaaaagctcagacacaaacacaagcaaacatgaagaacttatc
aattcccttaagaatattgtcctgggaagtgaactgtttagatcaagaccttgcatgact
atagatgtttgcagtgaacgtcaagtgcagcttattttggagatgttggtagattactca
gatgatcttcttcctttgccaatccctacaaagagtggaaccactaatgcagtacgaatt
gttttggcaaattcaaaagaagacaaggatttgttggagagagagcttcaaaattttgaa
gaggaggagagcaagaaaattcgtggatttcgagaggtgatcgatttgatttctgcttca
cagaaacctgttatctcccacaattgccttaatgattgtacactaattcattcaaaattt
attgcaccacttccgcctgaggtagatgaatttgtgagctccttgcgctcagttttcccc
aaggtacttgacataaattatttgatgaagaaacatggaaccatgagaaaagtgaccaac
attccgagtgctatgtcctacttgaataatcatttctttgcacctgttgatttggaaatt
cctgaccaagctacagtaaaagaaggcaagattcatggacttaatgcattaaggctttgc
tatttatttatgaaactctgctctatattgaaaatttccccaaatgttactgaatctggt
aataagcatttggcccccgagcttgaagacttcaccaatgtattccatccatgctcagcc
cctattcaagattcatctaatggggatgttggcgtgtggaccaataatacaaaaagagtc
ggttgtgaacaattggttttcttatggggattcaaatttggtatgacagctggcatgctg
aagagtgtacttcgttcatcccatgatatcttttcaggagagtttgatgttaaattggtg
gataaaagttgtgccattgttgttttctggcaatctggggtatcaaaagaatttatggac
gtgatgaatagtgaagaaataaggggggacttaaaggagttggtgtcagatggcctgcgg
gtaactggttatgatacctacaacacgatatgcaggctaggtttgtgggagatggatctt
gcagtgtcattagaaagagccttggaaagttctagctgtgagaataattgtgagaaaaaa
tcttctgagattcattggtataatgacaatgtgattaacttggatgatctttaa
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