Cajanus cajan (pigeon pea): 109809549
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Entry
109809549 CDS
T04868
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109809549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccaj03041
]
109809549
03009 Ribosome biogenesis [BR:
ccaj03009
]
109809549
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109809549
Spliceosome [BR:
ccaj03041
]
Complex A
U1 snRNP components
U1 related factors
109809549
Complex B
109809549
Ribosome biogenesis [BR:
ccaj03009
]
Eukaryotic type
Pre-60S particles
Helicases
109809549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
109809549
NCBI-ProteinID:
XP_020228476
LinkDB
All DBs
Position
11:4909109..4915095
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AA seq
506 aa
AA seq
DB search
MSRYDSRSGDPASYRDRRSDSGLGGPTGFGGSVQHSSSNRKDYDGGASPRNLSLDGLPHF
EKNFYIESSAVRAMTDAEVNEYRQLREITVEGRDVPKPVKTFHDAGFPEYVMQEIAKAGF
TEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDHGDGPIVLILA
PTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLES
NHTNLQRVTYLVLDEADRMLDMGFDPQLRKIVSQIRPDRQTLYWSATWPKEVEQLARKFL
YNPYKVIIGSSDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQ
ITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINY
DFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMGR
GAPPPPSGPRGFQDRGRGYGSSRPWS
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctacgatagccgctccggcgaccccgcttcctaccgcgaccggagaagtgat
tctgggctaggtggacctacaggttttgggggttctgttcaacactcttcatcaaacagg
aaggattatgatggtggtgcgtcgccaaggaacctcagtttggatggtttacctcatttt
gagaaaaatttctacattgagtcttcagcagtaagggcaatgacagatgctgaggttaat
gagtaccggcagctgagggaaataactgttgaaggtcgagatgtccctaaacctgtcaag
acctttcatgatgctggttttccagaatatgtaatgcaagaaattgcaaaagctggcttt
actgaacctacacccattcaatctcaaggttggccaatggcattgaagggacgtgatctg
ataggaattgcagaaacaggatcagggaagacacttgcttacttgttgcctgccattgtt
catgttaatgctcagccaattctagatcatggagatggaccaattgtgttaattttggct
ccaactcgtgaacttgctgtgcaaatacaacaagaggctactaaatttggtgcgtcatct
aggattaagagtacatgcatctatggtggggttccaaagggacctcaggtgcgtgatctc
cagaaaggtgttgaaattgtaattgccactcctgggaggttaattgatatgctcgagtca
aatcatactaacttgcagagggtcacataccttgtgttggatgaagctgataggatgttg
gatatggggtttgatcctcagcttcggaagattgtctctcagattcgtccggaccgtcag
actttgtattggagtgctacctggccaaaggaggttgaacaattggcaagaaagtttctt
tataacccatacaaagtaattataggttcttcagatttaaaagctaaccatgcaatacgg
caatatgttgacattgtttcggaaaagcagaaatatgataaactggtgaagttgctagag
gacatcatggatggcagtcgaatactgatatttatggataccaaaaaaggatgtgatcag
atcactcggcagctccgcatggatggctggcctgcactctcaattcacggagataaaagt
caagcagaaagggattgggtgctctcagaatttaaatcgggcaaaagtcctattatgacc
gcaacagatgttgcagctcgtggattagatgtgaaggatgtgaagtatgtgataaattat
gacttcccggggtcacttgaggactatgttcatcgcattggccggactgggagagctggt
gcaaaaggaactgcatacacattcttcacagctgctaatgccagatttgcaaaggaactt
atagccatacttgaggaagctggacagaaagttagtcctgaactagcagcaatgggacgt
ggtgcaccacctccaccttcgggtccccgaggtttccaagaccgtgggaggggttatggc
agttctcgtccatggagctaa
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