Cajanus cajan (pigeon pea): 109809736
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Entry
109809736 CDS
T04868
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03030
DNA replication
ccaj03420
Nucleotide excision repair
ccaj03430
Mismatch repair
ccaj03440
Homologous recombination
ccaj03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109809736
03420 Nucleotide excision repair
109809736
03430 Mismatch repair
109809736
03440 Homologous recombination
109809736
03460 Fanconi anemia pathway
109809736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccaj03000
]
109809736
03032 DNA replication proteins [BR:
ccaj03032
]
109809736
03400 DNA repair and recombination proteins [BR:
ccaj03400
]
109809736
Transcription factors [BR:
ccaj03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
109809736
DNA replication proteins [BR:
ccaj03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
109809736
DNA repair and recombination proteins [BR:
ccaj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
109809736
MMR (mismatch excision repair)
109809736
DSBR (double strand breaks repair)
HR (homologous recombination)
109809736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
RADX
zf-like
Motif
Other DBs
NCBI-GeneID:
109809736
NCBI-ProteinID:
XP_020228711
LinkDB
All DBs
Position
11:44381794..44384612
Genome browser
AA seq
628 aa
AA seq
DB search
MSVNLTPNAIPAIVSGDMNSKPLVQVLDIKLIPNSKQQERYRILLSDAVSSQHAMLATQL
NDRVQTGRVKKGSVVQLIDYICSPIQNRKIVVVLNMETIIPDCEIIGNPKTFVESDLPTQ
GALPNNNLENSFKSNNVHLPAQNTNCNMQNFRPTVKPSYQLPPLPVYKSHGAIVKNEAPA
HIIPIAALNPYQGRWAIKARVTAKGGLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV
VDRFYDAIEIGRVYLISKGSLKPAQKNFNHLKNEWEILLDLASTVELCPDEDGSIPRQQF
SFRHISDIANVDNNSILDVIGVVTFVNPSVPILRKNGMETRRRNLNIKDCSGRSVELTLW
GEFCNREGQKLQEMVNAGFFPILAIKAGKVNDFTGKSIGTISSTQLFINPDFSEARSLRD
WFDRGGKDSASVSISKDIIPGVPKNDVRKTVSQIKNEGLGRSDKPDWITVRARISFIKTD
TFCYPACPLLIGDRQCNKKVTRSDNTRWQCDRCNQEFEECDYRYLLQAQILDPTGIAWVT
AFQESGEDILGYSAKELYMLKYEQQDDEKFGGIIKSRLFNQFVLRLKIKEELYGDEQRVK
ITVVKADKADYASESRHMLDLISNLWRH
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgaatctgacgccgaatgcgatcccggcgatagtgtccggcgatatgaactcg
aagcctctggtgcaggttcttgatatcaagttgattccgaatagcaagcagcaagagagg
taccggattttgctctccgacgccgtttcctctcagcacgccatgctcgcaactcagctc
aacgaccgagtccaaaccggacgagtcaagaaaggttccgtcgttcaactcatcgactac
atttgcagtcctattcagaatcgcaagattgttgtggtgctcaacatggaaactataata
ccggattgcgagatcattggaaatccaaagacgtttgtggaatctgatttaccaactcag
ggagcattacctaataacaatttggagaactcattcaagagtaataatgttcatcttcca
gctcaaaatacaaattgtaatatgcagaatttccggccaactgttaaaccttcataccaa
ctgccgccactgccagtttacaaaagccatggtgcgattgtgaaaaatgaggccccagca
catattattccaatagctgctttaaatccttatcaaggtcgatgggccatcaaggcaagg
gtaactgcaaaaggaggtctgcgccgctataataatgctcggggagatgggaaggttttc
tcatttgatctccttgattctgatggaggtgaaatacgggtaacctgttttaatgcagtt
gtggatcgcttctatgatgcaattgagataggtagagtttacttgatatccaaaggcagc
ttgaaacctgcgcagaaaaacttcaaccatttgaagaatgaatgggaaattcttttggat
ttggcatctactgttgaactttgtccagatgaagatggttctataccaagacagcaattc
tcctttaggcatatcagtgatattgcgaatgttgacaataactctatacttgatgttatt
ggcgttgtgacatttgtcaatccatcagttcccattttgaggaaaaatgggatggaaacc
cgtagaagaaatttaaatataaaggactgctctggcaggagtgttgagctaactctttgg
ggtgaattttgcaacagggaaggccaaaagttgcaagagatggtcaatgctgggtttttc
cccattctggcaatcaaagctgggaaggtcaatgacttcactgggaaatctattgggact
atttcttctacacagcttttcataaatccagatttctctgaggcacgtagcttaagggac
tggtttgatcgagggggaaaagattctgcttctgtgtccatttctaaggacattatacct
ggagtacccaagaacgatgtacgtaaaactgtgtctcagatcaagaatgaaggtctgggg
cggtcagataagccagattggataacggtgagggcaagaatttctttcatcaagacagat
acgttttgttacccagcttgccctcttttgattggagatcggcagtgcaacaagaaagtg
actaggtcagacaacacaagatggcaatgtgatagatgtaaccaagaatttgaggagtgt
gactaccgatatctccttcaagctcaaattctggatcctacaggaatagcttgggtaact
gcttttcaggaatcaggggaagatattttgggttactcggctaaggagctgtacatgttg
aagtacgagcagcaggatgatgagaagtttggaggaataatcaagagtagactcttcaac
caatttgtcttgaggctaaaaattaaagaggaattgtatggtgatgaacagagggtgaag
attacagtagtgaaggcagataaggcggattatgcttctgagagtagacacatgcttgat
ttgatttcgaatttgtggaggcactag
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