Cajanus cajan (pigeon pea): 109809861
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Entry
109809861 CDS
T04868
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109809861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109809861
03012 Translation factors [BR:
ccaj03012
]
109809861
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109809861
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109809861
Translation factors [BR:
ccaj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109809861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RVT_3
HA2_C
DEAD
OB_NTP_bind
Helicase_C
HA2_N
R3H
AAA_19
AAA_22
Ank_2
Ank_5
nSTAND3
ATPase
ABC_tran
AAA_7
PhoH
AAA_25
Motif
Other DBs
NCBI-GeneID:
109809861
NCBI-ProteinID:
XP_020228856
LinkDB
All DBs
Position
11:complement(9350930..9366068)
Genome browser
AA seq
1482 aa
AA seq
DB search
MASNDRVYNFEDKFSIKDLALVGKLCQKVGHSGKFPGRVIRKKTSVRKTKTKTKTKKEVD
TAKDVGSLPQVTVFEESNQNKEPEPSQHQNPIVDESTMIQISQTLEIFLASNDEVYNFEA
NLSPEECVAVHHLSQKMGLRVENFGSGIKQKLSVHKIKNKIPTTAKLENLRCFIFSEESK
KVLGGLLMHYPSGDEELWGDMIGAYSDTTNRMEQKEDDFFCQPCMSKVEITNKLEDLSAR
MKNPSDLKLIAEKRSKLPIASLKDVITSTVESNQVVIVCGETGCGKTTQVPQYILDNMWG
KGEVCKIVCTQPQRISTTSVSERISSERGETVGNTVGYKLWFESRGGRQSSIVLCTTGVL
LKVLVSTGSHFLKTRSVKDDIPCISHIIMDEIHERDKYSDLMLAILREMLPSNPHLRLIL
MSASADAARFSQYFGGCPIIYVPGLKYPVKTYYLEDVLSIVKSGAYNHHDNNHELSQAEK
LSLDEAIDFAWSNDEWCSLLELLYSKATSKVFDYQHSLTGLNPLMVFAGKGKVGDMCMLL
SLGANCLLRATDGTTALEIAEKENQKVAVELLKKHMDNDFSNKEGKIFIDKYPAIVNPNV
VNVFLIEQLIRKICVDSEDGGIIVYLPGWDEIIKTRERLLASPFFNKRSKFRVISLHSMV
PAIELKKVFMPPPHGCRKIVLSTNIAETAVTVDDIVYVIDTGLVKGKGYDAYNNVLTLQS
SWISKASAKQRKGCASRCQPGICYRLYLKVQADSLPDFLAPEIKRMPIEDLCLQVKLLDP
SCKIEGFLNRTLDPPVFKSIQNGVRVLQEIGALSVDEQLTQLGEKLGSLPVQPSTSRMLL
FSILMNCLDPALTLACASEYTDPFVLPLLPDEKERAAAARSELASLYGGCGDQFAMIAAY
ECWYNSKKMGLESRFCSQYFVSQSSMKKLLNMRKKLVEELYRNGLIHGNVSSYCSNAHDP
GILQAVLVAGMYPMVGKLFFPPGSGNKFFVKTKNGDAVYLNSHSVNSILSSQKSFDSSLV
VYEEITSSSQGMCIQSCTVVGLLPLFLLSKEIAVAPAKHCTEGDEFMSSPDNLVRVTIDR
WLNFESTALDASQMNYLRERLSTAISYKVTHSTDVLPPVLRTAVDALACILSCHGLSGIP
GTSDCVNTLNTTINASNPKEFREGLINQDALQINPSIVKVSESEAIQNPSNQTNQNSPIG
LGCSTPTKQTDKTPERFCSALIIHNDMPSSGTSISASYDAENPSHPTCQNATSSACSVQS
AHINDDVTMTDLTPSKDLNSIWWDASKGAHFRKIAVGWTFPENGWVKANVDGSFRPQNRH
SSCGGVFRDSTGSWCFGFALNLGALFCGSIGSPKFLDYVVIFSELWGIFTALKLAKEKGI
LKLWVETDCKEALKYVFNKRSVKNVYFGPLVRSIVKLMEGDWTVQLSSCYRERNNVADWL
ASYAHTIEVGLHVFDAPPPGCVKYLTEDSAGVSKFRTVRVEQ
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaacgatcgagtgtacaattttgaagataaattttccattaaagatcttgct
ctagtggggaagttatgccaaaaagtggggcatagtggtaaatttcctgggcgtgtgatt
agaaagaagacgtccgttcgcaaaaccaaaaccaaaaccaaaaccaaaaaggaggttgac
actgccaaggatgtgggtagtcttcctcaagtcacagtttttgaagagtcaaatcagaat
aaggagccagagccatctcagcatcaaaatcccattgttgatgaatcaacaatgattcag
atttcccagaccttagaaatttttttagcatcaaatgatgaagtgtacaattttgaagct
aacttgtctccagaagaatgtgttgcagtgcatcatttatcccagaaaatggggttacga
gttgaaaattttgggagtgggattaaacagaaactatctgtgcacaaaatcaaaaataag
attcccaccactgccaagttagagaatcttcgttgtttcatattttctgaagagtcaaag
aaggtattaggtggtttattaatgcattatccatctggtgatgaagaactttggggagac
atgattggagcatatagtgacactactaacagaatggaacaaaaggaagatgattttttc
tgtcagccttgtatgagcaaagttgaaattactaacaaattggaggacctttctgcaaga
atgaagaatccctctgacttgaaactgatcgctgagaagagatctaagcttccaattgca
tccttgaaggatgtcattacatcaactgttgaatctaaccaggtagtaatcgtatgtggt
gagactggttgtggaaagaccactcaggtcccacaatatattttggataacatgtggggt
aagggtgaggtctgcaaaatagtttgcactcagcctcaacgtatctctacaacttcagtt
tctgagagaatctctagtgagagaggagagactgttggaaacactgttggatacaagtta
tggtttgaaagcagaggtggaaggcaatcatcaattgtgctgtgtactactggagttcta
ttgaaggtgttggtttctacaggttcccattttctgaagacacggtctgtgaaggatgac
attccttgcattagtcacataattatggatgaaattcatgaaagggacaaatactcagac
ctcatgttggcaatcctcagagagatgctcccttcaaatccccacctacgtctgatacta
atgagtgctagtgctgatgctgcaagattttctcaatattttggcggctgcccaattatc
tatgttccaggactcaaatatccggtcaagacttactacttggaggatgtgctttctatt
gtaaaatctggagcatataatcaccatgataataaccatgaacttagtcaggcagaaaag
ttgtctctagatgaagcaattgattttgcttggtctaatgacgaatggtgctcactgtta
gagcttctttattctaaagctacctcaaaggtctttgattatcagcattcattaactggc
ctaaatccattaatggtgtttgctggaaaaggtaaagtgggtgatatgtgcatgctccta
tctttaggggcaaattgccttttaagggccacagatggaacaactgcactggagattgct
gagaaggaaaaccagaaagttgccgttgaattgctgaagaagcacatggataatgatttt
tccaacaaagaagggaaaattttcatagataaatatcctgcaattgtcaacccgaatgtt
gtcaatgttttcctgatagagcaactgataagaaaaatatgtgttgattcagaagatgga
ggcatcatcgtttaccttccaggttgggatgagataattaaaacacgtgaaagattgctt
gcatccccttttttcaataaaagatcaaagtttagggtcatatctctgcattcaatggtt
ccagccattgagctaaagaaggtttttatgcccccaccccatggatgccgcaaaattgtt
ctctctaccaatattgctgaaactgcagtaactgtcgatgatatagtgtatgtcatagac
actggacttgtcaaaggaaaaggttatgatgcttacaataatgtgttaactctccaatca
tcttggatttcaaaagcaagtgctaagcaaagaaagggatgtgctagtcgttgtcaacct
ggaatttgttaccgtctatatttaaaagttcaagcagattccttgccagattttttggca
cctgaaattaagagaatgcctattgaagatctctgtctgcaggtgaagttgcttgatcca
agctgcaaaatagaagggtttctgaaccggacattagatcctccagtatttaagtctata
caaaatggtgttagagttcttcaagagatcggggcattgtcagttgatgaacagctcacc
cagctaggggagaagcttggctctcttcctgttcaaccatcaactagcaggatgcttctc
ttttccatattgatgaattgccttgatccagctttaactcttgcatgtgcatctgagtat
acagatccatttgtgcttccgcttttacctgatgaaaaggagagagctgcagccgctaga
tctgagctagcttctttgtatgggggttgtggtgaccagtttgctatgatagcagcatat
gaatgctggtataattcaaagaaaatgggtctagaatcacggttttgttctcaatacttt
gtttctcaaagcagtatgaaaaagttattgaacatgcgtaagaaattagtggaagaacta
tatcggaatgggcttattcatgggaatgtttcaagttattgctcaaatgcccatgatccg
ggtatacttcaagctgttttggtagctgggatgtatccaatggttgggaaattgtttttt
cctcccggaagtggaaataagttttttgtgaagactaaaaatggcgatgctgtttacttg
aatagtcattctgttaattctattttgtcatctcagaaaagttttgatagctctttagtt
gtatatgaggagattacgagcagctctcagggcatgtgcatacagagctgtactgttgtt
ggactacttccattattcctgctttccaaagagattgcagttgctcccgcaaagcattgt
acggaaggagatgagtttatgtcttctcctgataatttagttagagtaaccatagatcgg
tggcttaattttgagtcaacagcacttgatgcttctcagatgaactacttgagagagcga
ttatcaacagctatttcatataaagtgacacattcaacagatgttcttcctcctgttcta
cggactgctgtggatgccttagcttgcattctgtcttgtcatggactttctggcatacca
gggacctcagattgtgttaacacactgaatactactataaatgcttccaatccaaaagaa
ttccgagaagggcttataaatcaagatgcactccagatcaatccttctatagttaaggta
tctgaatctgaggcaatccaaaatccaagtaaccaaactaatcaaaattctccaattggt
ttgggatgctcaaccccaacaaagcaaacagataagactccagaaagattctgttcagcg
cttataattcacaatgacatgccttcttctggaactagcatatcggcatcctatgatgca
gaaaatccaagtcatcctacatgtcaaaacgctacaagttcagcttgctcagtccagtca
gcacatataaatgatgatgtaaccatgactgatttgacgccttctaaagatctaaattca
atttggtgggatgcttcaaaaggggctcacttccgcaagattgcagttgggtggaccttt
cctgagaatggatgggtcaaggctaatgtagacgggtccttcaggcctcagaatcgtcac
tctagctgtggaggagtttttcgcgattccacgggttcttggtgctttggcttcgcactg
aatcttggagccttgttctgcggatcaattggatcaccgaaatttttggattacgtggtt
atcttttctgaactgtggggtatcttcactgccctcaagcttgctaaggagaaaggtatt
ttgaagctgtgggtcgagactgattgcaaagaagcattgaaatatgtttttaataaacgg
tcagtgaaaaatgtttattttggtcctcttgttcgttccatagttaagttgatggaggga
gattggacagttcaactttcctcttgttatcgtgaaagaaacaacgttgctgactggtta
gcttcctatgcgcatacaatcgaggtgggtcttcatgtgtttgatgcccctcctcccggt
tgtgtcaaatacttaactgaggactctgctggagtttctaaattccgtactgtacgtgtt
gagcaataa
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