Cajanus cajan (pigeon pea): 109810696
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Entry
109810696 CDS
T04868
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109810696
09123 Folding, sorting and degradation
03018 RNA degradation
109810696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109810696
03041 Spliceosome [BR:
ccaj03041
]
109810696
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109810696
mRNA degradation factors
5'-3' decay
Lsm complex
109810696
Spliceosome [BR:
ccaj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109810696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
109810696
NCBI-ProteinID:
XP_020229823
LinkDB
All DBs
Position
Unknown
AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT
TDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcagaaaagaaacggttctggaccttgcaaagtttgtagacaaaggcgttcaa
gttaagcttactggtggcagacaagtgacagggactctaaaagggtatgatcagttgctt
aaccttgtcctagatgaagctgtggagtttctaagagatgctgatgatcctctgaaaact
accgatcaaaccagacagcttggcttaattgtttgtagaggaactgctgtcatgcttgtg
tccccaactgatggtacagatgagatcgccaacccctttatacagccagatggggcctaa
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