Cajanus cajan (pigeon pea): 109811422
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Entry
109811422 CDS
T04868
Name
(RefSeq) endoribonuclease Dicer homolog 2 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ccaj
Cajanus cajan (pigeon pea)
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccaj03036
]
109811422
Chromosome and associated proteins [BR:
ccaj03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109811422
microRNA pathway
RISC loading complex
109811422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
Dicer_dimer
PAZ
Cas3-like_C_2
SWI2_SNF2
AAA_22
SNF2-rel_dom
dsrm
Motif
Other DBs
NCBI-GeneID:
109811422
NCBI-ProteinID:
XP_020230766
LinkDB
All DBs
Position
Unknown
AA seq
1392 aa
AA seq
DB search
MEEALPMEIDTNTPQQKITRDVLPFARSYQLEALENAIRENTIVYLETGSGKTLIAVMLL
RSYAHLLRKPSPFVAVFLVPQVVLVSQQAQAVRMHTDLNVGMYWGDMGVDFWDATTWKQE
TETHEVLVMTPAILLNCLRHSFFKLNMIKVLIVDECHHARGKHPYACLMTEFYHHQLNSG
ISDLPRIFGMTASPIKSKVGNSESSWANNIRKLMTLMHSKVYTCVSEAVLAEFIPTSTPK
FKFYRDNGVQFVLFEELAFKLKMLKEQHEITLRSSDFTKTAAESAEKRITKIFSALMFCL
DELGVWLALKAAESLSSNESESFSWGHSGDRVLRSFILDGVHTLKTYLPCASQWSIGDNI
KSDVEMGLLTSKVCCLIDSLLEYRGLTDMRCIIFVQRVITAIVLQDLLNTLLPKYNSWKT
KFIAGHNFGLQNQSRRKQNGIVEEFRMGLVNIIVATSILEEGLDVQSCNLVIRFDPSPTV
CSFIQSRGRARMQNSDYILMVKSGDSVTCSRLEKYLASGDIMRKESLRHSSLPCDLFEGD
EFDEETYRVASTEAFANLSSSIGLIHLYCSRLPSDGYFKPTPRWDKVTGTLYLPKNCPLQ
PIHVEGDKKILKNIACLEACKQLHKIGALTDNLVPDIVIEEAEVEEFGNEPYDENQPTYV
PFGLVNSVSNNSHTTYHCYLMEFNQNFSYDICVQDIFLATRIELDPEIGCTQFDMGFDRG
SLSVKLRYKGTINLFPDQVLLCKKFQVTILRILIENNMDKLATDIDKSYLEDNLEIDYLL
LPAIDKGLNPVVDWLAINSVNPCSIRCKIHQPTIWTKSGLVCTCKLQGSLVCTSHANGKI
YFYVTTGLMDLNGNSPMELRGGGVTTYKAYYEQHHGIELQFEHQQLIKARHKFQVKNYCH
GRKQGKGREASKAFVELPPELCFIVMSPLRDSIIYSFSFIPSIMHRLEALLLAFNLKKMH
LDHCSQNEIQTIRVLEAITTKRCNETFHYESLETLGDSFLKYAASQQLFKTYQNHHEGLL
SVKREKIISNAALCKLGCSSGLPGFIRNEPFDPIAWTIPGDKSGSFKLKELDIKGRKIYV
SGNRKLKRKIVADVVEALIGAFLSTGGEKAALLFMDWVGIKVSFNKIPYDRLFDIQPEKL
VNVSFIESRLKYSFHDRSLLVEALTHGSYMLPEVPRCYQRLEFLGDSILDYLITWHLYKK
YPGMSPGQLTDMRSASVNNDSYAWSAIKHGLHKHVLHASQELHKHIAVTLDNFDKLSSSS
TFGYESDTSLPKVLGDIVESLAGAILVDSGYNEEVVWESIRPLLEPLVTPETLKLHPIRE
LNELCQKRNYQVIRDTGSRKDGVTSYRMEVEADGVIHQFEYLGPALKDTAKKIVCKEILN
SLKKEESHTGMV
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagcactgccaatggagatagataccaataccccgcagcagaagattactcgt
gatgttcttccattcgctagaagctatcaacttgaagcattggagaacgctatccgtgag
aataccatagtttacttggagactggttcaggcaagactttgatagccgtcatgcttctt
cgcagctatgctcatcttctgcgcaagccttctcctttcgtcgcagtgttcttggttccc
caagttgtgttggtgtcacaacaagctcaagccgtgagaatgcacactgatttgaacgtg
gggatgtattggggagatatgggagttgacttctgggatgctactacgtggaaacaagaa
acggagacacacgaggtgcttgtcatgactcctgcaatattgctgaattgcttgaggcat
agctttttcaaactgaatatgatcaaggttttaatagtggatgaatgccatcatgctagg
ggtaaacacccatacgcctgcctcatgactgaattttatcatcaccaattaaattctggt
atctctgacctccctcgaattttcgggatgactgcatctccaattaagtcaaaagttgga
aattctgaatcatcctgggcaaataatattcggaaactaatgactctaatgcattcaaag
gtatatacatgtgtaagtgaagctgtcctcgctgagttcataccaacatcgacaccaaaa
ttcaagttttacagggataatggagttcaatttgtattatttgaagaattagcatttaaa
ctcaagatgttaaaagagcagcatgaaatcactctaagaagttcagatttcactaaaaca
gctgctgagtctgcagaaaaaagaataacaaagattttttctgctttaatgttttgccta
gatgagcttggtgtttggttggctttgaaggctgcagagtctttatcttccaatgaaagt
gaatcattttcatggggacactctggtgatagagttcttagaagctttattttggatggt
gtgcatacgcttaaaacatacttaccatgtgcatctcaatggtctattggtgacaatatc
aaatctgatgtggaaatggggctgttaacctccaaagtttgctgtcttattgactctcta
cttgagtacagggggttgacagatatgaggtgcataatttttgtgcaaagggtcattaca
gccattgtccttcaggatttattgaataccttgcttccaaaatacaatagctggaagact
aaattcattgcaggacacaattttggtttgcaaaatcagtcaaggagaaaacaaaatgga
attgtggaagagtttcgaatgggattggtcaacatcattgttgcaacatcaattctcgaa
gagggtttagatgttcaaagttgcaatttagttattagatttgatccatctcccacagtg
tgcagtttcatacagtcccggggacgtgccagaatgcaaaattcagattacatattaatg
gttaagagtggggattcagttacttgttctcgactagaaaaataccttgcaagtggggat
attatgaggaaggagtcgttgcgtcattcttcccttccatgtgatctttttgaaggtgat
gaatttgatgaggaaacttaccgtgttgcaagcactgaagcctttgcaaatcttagttct
agtattggtttaatacacttgtattgctcacggcttccttcagatgggtactttaaaccg
actccaaggtgggacaaagtgaccggaacattgtatctacccaagaactgccctctacag
cctattcatgtagaaggtgacaaaaagatcttgaagaatattgcttgccttgaagcatgc
aaacaacttcataagattggagctctgacagataatcttgttcctgatattgtcattgaa
gaagcagaggtggaggaatttgggaacgaaccttatgatgaaaaccaaccaacgtatgtc
ccatttggattggtaaattctgtgtcaaataatagtcacacaacctaccattgttatttg
atggagttcaatcaaaattttagctatgatatctgtgtacaagatatttttcttgccaca
agaattgagcttgatccagaaatcggatgcacacaatttgatatgggttttgacagaggt
agcttgtctgtgaagttaagatacaaaggaaccattaatctttttccggatcaggttctt
ttatgtaaaaaattccaggttactattcttagaattctcatagaaaataatatggataag
ttggcgactgatatagacaaatcctatttggaagataatcttgagattgattatcttctg
cttcccgctattgataaagggctaaatccagttgtcgattggttagcaattaattctgta
aatccatgtagcattaggtgtaagattcatcaaccgaccatatggactaaaagtggccta
gtttgtacttgtaaactgcaaggttcattggtttgtacttcccatgctaatggtaagatt
tatttctatgtcaccactggtttaatggacttgaatggaaactcccctatggaactaagg
ggaggtggagttacgacatacaaggcttactatgaacaacatcatggcattgaattgcaa
tttgaacatcaacaactaattaaagcaagacacaagtttcaagttaaaaattactgtcat
ggacgcaaacaagggaagggaagagaagcaagtaaggcctttgttgaattacctcctgag
ctgtgctttatagtcatgtcaccactacgagatagtatcatctattccttctcgtttatt
ccgtcgataatgcatagacttgaagcattgctcctagctttcaaccttaaaaagatgcat
ttggatcattgctcacagaatgaaattcaaacaatcagggtgttggaagcaatcacaact
aaaagatgcaatgagacctttcattatgagtctctagagactcttggagattcttttctt
aaatatgcagccagtcagcaactttttaaaacatatcaaaatcaccatgaaggtctcctt
agtgtaaagagggaaaagatcatatctaatgctgccctctgtaagctagggtgcagttct
ggacttccgggcttcatacgaaatgagccttttgatcctattgcctggactattcctggt
gataaatctggaagttttaaattgaaagagttggatatcaagggcagaaaaatttatgtt
agtggaaatagaaaattaaaacgaaagattgttgctgatgttgtcgaggcactaattggg
gccttcctcagcactggtggtgaaaaggctgcattgctatttatggattgggttggtatt
aaagtgagtttcaataaaattccctatgataggctgtttgacattcaacctgagaaactg
gtaaatgtcagctttatagaatcacgattgaagtactcattccatgaccgttctcttttg
gtggaagctctgacccatggttcttatatgcttcctgaagttcccagatgttatcagcga
cttgaatttctgggagattcaatattggattatctgattacttggcatttgtacaaaaaa
tatcccggcatgtcacctgggcagctgactgacatgagatcagcctctgtgaacaatgat
agttatgcatggtctgccattaagcatgggttgcataaacatgtactccatgcctcacaa
gagctgcataagcatattgctgtcacactggacaattttgataagttatcttcgtcatca
acttttggatatgagtcagatacatcactccccaaggtacttggagacattgtagagtct
ctggctggagcgattctcgttgattcaggatacaatgaggaggttgtgtgggaaagcata
aggccacttttggaacccctcgtcacacctgaaacgttgaagctccatcccatccgagag
ttgaatgaactctgccaaaaaagaaattatcaagttatacgtgacaccgggtcccgcaag
gatggtgtgactagttatagaatggaggtagaagctgatggggtcattcaccagtttgag
tatttaggtcctgctcttaaggacacagctaagaagatagtctgcaaggaaattttgaat
tccttgaagaaagaagaatcacacacaggaatggtttaa
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