Cajanus cajan (pigeon pea): 109811726
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Entry
109811726 CDS
T04868
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109811726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109811726
03012 Translation factors [BR:
ccaj03012
]
109811726
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109811726
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109811726
Translation factors [BR:
ccaj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109811726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
T2SSE
nSTAND3
AAA_19
AAA_16
ATPase
PhoH
Motif
Other DBs
NCBI-GeneID:
109811726
NCBI-ProteinID:
XP_020231131
LinkDB
All DBs
Position
Unknown
AA seq
1154 aa
AA seq
DB search
MRNSKYAAFLLVARAKSLQRHHHTCRCLPSSYSSPATPLFRFWRSSLCSAKTLAATRLFS
SYYSLEQFSDDEYDCDFENQQASSTVANVDEWKWKLSMLLRSEKDQEIISRDRKDRRDYE
QIANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQRELVIPLSLQRRVEGLLQEY
LDRLQLNSAKTADSVDDVNSTNQVKDIEMDESADSFVDESVMEKVLQKRSLRMRNMQRAW
QESPEGRKMLEFRKSLPSFKEKQRLLQAIAHNQVIVVSGETGCGKTTQLPQYVLESEIES
GRGAFCSIICTQPRRISAMAVSERVSAERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGI
LLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELF
SKYFGGSPTFHIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQKQLAPRK
RKNQITALVEDALSKSSFENYSSRARDSLASWTPDCIGFNLIEAVLCHICRKERPGAVLV
FMTGWEDISSLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNIRKVILATN
MAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECY
HLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPRAVQNAID
FLKMIGALDEKESLTNLGKFLSMLPVDPKLGKMLIMGAIFRCFDPVLTIVSGLSVRDPFL
LPQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAI
HSLRKQFSFILKEAGLVDPDASIINRLSHNQSLVRAIICSGLFPGIASVVHRETSMSFKT
MDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGI
QAGHLKMLDGYVDFFMDPSLADCYLKLKEELNKLIQKKLEDPSIDIHKEGKYLMLAVQEL
VSGDQCEGRFVFGRESRKPRASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKT
NEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQHEDDNSPPDVTDNML
KLLGKRRKSKRRHG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaattcaaagtacgcagcgtttcttctcgtagcacgtgccaagtctctccaacgt
caccaccacacgtgtcgctgccttccttcttcttattcttctcccgcaaccccactcttc
aggttttggcgttcttccctgtgcagtgcgaaaaccctcgccgccacgcgcctcttctct
agctactactccctcgaacaattctccgatgacgaatacgactgcgatttcgagaaccag
caggcatcatctactgtggccaatgtggatgagtggaaatggaaactcagcatgctgtta
cgcagcgagaaggaccaggagattatatctagagacagaaaagataggagggactatgaa
cagatagctaaccttgccaaaagaatggggctttacagtgagttgtttggaaaagtggtt
gtagcaagcaaggtgcctcttcctaactaccgcccagatttggatgacaaacgtccacag
agagagctggtaattccactaagtttgcaaaggagggttgagggtttgttgcaggaatac
cttgatagacttcagttgaattctgcaaagacagctgatagcgtggatgatgtgaactcc
accaatcaagttaaagatatagaaatggatgaaagtgctgattcttttgtagatgaatct
gttatggaaaaggttctccaaaagaggagtttgaggatgcgtaatatgcaaagagcttgg
caggaatcacctgaaggcaggaagatgctggaattccggaagtctctaccatcattcaag
gagaagcaacgtttacttcaagctatagcacataatcaggtgatagttgtatcgggagag
actggctgtggtaaaaccactcaacttcctcagtatgtattagaatcagagatcgagtct
ggtcgtggagcattttgtagcattatttgcacacagcctcgaaggatatctgccatggca
gtgtctgagagagtgtcagcagagcgaggagagcctcttggtgaaacagttggcttcaaa
gttcgattagaaggaatgaaaggaaaaaacacccatctgctgttttgtaccagtggtata
ttacttagaaggttgttgagtgatcgaaacctgaatggtataactcatgtttttgtggat
gaaattcatgaaagaggcatgaatgaagacttcttactgattgtgttaaaggatctgctt
ccacgtcgtcgggatttaagattggttttaatgagtgccaccttgaatgctgagctcttc
tcaaagtattttggaggttctcctacatttcatattccgggtttcacctatccagttaga
gctcactttttagaagatgttttggaaatgactggatataaattgacttccttcaaccaa
attgatgattatggtcaagagaaaatgtggaagacacaaaagcaactagcaccacggaag
aggaaaaaccagatcactgcccttgttgaggatgctctttctaaatcaagctttgagaac
tatagctccagggcacgtgattcactagcatcttggacacctgactgcatagggtttaat
ctcattgaggctgttctatgccatatatgtcggaaggaacgaccgggtgctgtcttagta
tttatgactgggtgggaggatataagctctttaagagatcagcttaaagcacatcctctt
ttaggagatcccaatagggttttgcttctaacgtgtcatggttcaatggcaacatcagaa
cagaaactcatatttgagaagccacctccaaatataaggaaagtgatacttgctacaaat
atggccgaggcaagtattacaatcaatgacatagtttttgtggttgattgcggaaaagca
aaagaaacaacttatgatgctttgaataacaccccgtgtcttcttccttcctggatatca
caagcatctgcacggcagagaaggggtagggctggccgtgtgcagccaggagaatgttac
cacctttaccccaaatgtgtttatgaagccttttctgagtatcaacttcccgaactgctg
agaacaccattgaactctctttgtttgcaaataaaaagtttgcaggttgagagcatagga
gagttcttatcagcagctttacaggcaccagagccacgggccgttcaaaatgctattgat
tttctcaagatgattggggcattagatgaaaaagaaagtcttacgaatcttgggaagttt
ctctccatgcttcctgtggatcctaagctgggaaaaatgttaataatgggagctatattt
agatgctttgatcctgttcttacaatagtttctggccttagtgtcagggatccttttctt
ttgccccaagacaagagggatttagcagggacagcaaagtctaggttttctgctaaagat
tacagtgatcatatggctcttgttcgagcatatgaaggatggaaagatgcagaaagagaa
gggtcagcttatgaatactgctggagaaattttctttcggcccaaactctacaggctatt
cattcacttcggaagcagtttagcttcatcttgaaagaagcgggcttagtagatccagat
gcaagcattattaacagattgagtcacaatcagtctcttgtgcgtgccatcatttgttct
ggactctttcctggcatagcatcagtggtgcacagggagacatccatgtcatttaaaacg
atggatgatggccaggttttattatatgctaattcagtgaatgcacgttaccagaccata
ccttacccatggttggtttttggtgagaaagttaaggtcaatgctgttttcatccgtgat
tccaccggtgtatctgattcaatacttatcctttttggtggtgctctgagtaatgggata
caggcggggcatctaaaaatgttagatgggtacgttgacttcttcatggatcctagttta
gctgactgctatttgaagcttaaggaagagctcaataagcttatccagaagaagcttgaa
gatcctagcatcgacattcacaaggaagggaagtacttgatgcttgctgttcaggagttg
gtttcaggggatcaatgtgaaggacgatttgtatttggccgtgaaagccgtaagcctaga
gcctctaatgatgagaacaaattcacaaaagatggaacaaatcccaagagcttgcttcaa
acactgttgatgcgagcagggcactcccctccaaaatacaaaacaaaacatctcaagact
aatgagtttagggcactggtggagttcaagggaatgcagtttgtgggcaaaccgaagaga
aacaagcaacttgcagaaagggatgctgctatagaggcattggcttggttgactcacacc
tctgacaataatcagcatgaagatgataattctcctcctgatgtcactgacaacatgcta
aaactcctagggaagcgtagaaaatcaaagcgtcgccatggttga
DBGET
integrated database retrieval system
