Cajanus cajan (pigeon pea): 109812120
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Entry
109812120 CDS
T04868
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52B
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109812120
03041 Spliceosome [BR:
ccaj03041
]
109812120
03036 Chromosome and associated proteins [BR:
ccaj03036
]
109812120
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109812120
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109812120
mRNA cycle factors
Common to processing body (P body) and stress granule
109812120
Spliceosome [BR:
ccaj03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
109812120
Chromosome and associated proteins [BR:
ccaj03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109812120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AA_kinase
Motif
Other DBs
NCBI-GeneID:
109812120
NCBI-ProteinID:
XP_020231587
LinkDB
All DBs
Position
Unknown
AA seq
597 aa
AA seq
DB search
MPSPYVPPQHRIPPFSHNFVRGAARPRGGGRNGSGARGFSRNNMRPVEDMQSLEGINLEA
YESVPVEASGKDVPPPVKAFHETDLDEGLKRNIERCKYVKPTPVQRHAIPIASAGRDLMA
CAQTGSGKTAAFCFPIISGILKGRSASAFSSMPRAAAVAVAYPTALILSPTRELSCQIRD
EANKFANQTGVKVVVVYGGAPVTHQLRLLERGVDILVATPGRLVDIIERERVSLMRIKYL
ALDEADRMLDMGFEHQIRKIVQQMQMPPPGVRQTLLFSATFPNDIQKLASDFLSNYIFLS
VGRVGSSTELIVQKIELVQDMDKRDHLIDHLRRHVVKGANGKHALTLVFVETKKGADALE
DWLSRSGFPAIAIHGDKVQFERERALKSFKSGNTPILVATDVASRGLDIPHVAHVINFDL
PRDIDDYVHRIGRTGRAGKSGLATAFFSDKNSPIAKALVGLLQEAKQEVPSWLNQYAEYT
PSGGRGRSFGAHRYTSGSYGGRDFRNATEPEVQNYNCYSTYGNANHAMEFYSDTTYTDTS
YDIQNSHRDSSFDSLNEASARRNYYQTGVNSGVDLYGVVVEEDGPCGYESIVATGWD
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgccttccccctatgtccctccgcagcaccgcatcccacctttctctcacaacttcgtc
cgtggcgccgctaggccacgtggcggtgggcgtaacggttccggcgcccgggggttctcc
cggaacaacatgcgacctgtggaggatatgcaaagcctcgagggaatcaacctggaggcg
tacgagtccgtcccggtggaggcgagtgggaaggacgtgccaccgccggtgaaggcgttc
catgaaacggacttggacgagggtttgaagaggaacatagagcggtgcaagtacgtgaaa
cccacgccggttcagcgtcacgcgattcccattgcgagtgcaggacgtgaccttatggcg
tgcgcgcagactgggtcgggtaaaacggcggcgttttgcttccccatcatttcggggatt
ttgaaaggtcgttccgcttctgctttctcatcaatgcctcgcgctgccgctgttgctgtt
gcataccccactgcacttattttgtctcctaccagagagttgtcttgccagatacgtgat
gaagccaacaaatttgctaatcagactggagtgaaggttgtcgttgtttatggtggggct
cctgttactcaccagttgcgtcttctggagagaggtgtggacatattggttgcaactcct
gggcgtttggtggatattattgagagagaaagggtttcattaatgaggataaagtatctt
gctttggatgaagcagatcgtatgttggatatgggttttgagcatcaaatacgcaagatt
gtgcagcaaatgcaaatgcccccaccgggtgttagacagactttgctgtttagtgccacg
ttccctaatgatatacagaagcttgcatcggactttttatccaactacatattcctgtct
gttggaagggttggttcgagtaccgaactgattgtgcagaagattgagcttgttcaggat
atggataaaagggatcatcttattgatcatcttcgtcgccatgttgtcaagggagccaat
gggaagcatgctttaactcttgtatttgttgaaacaaagaaaggagcggatgctttagaa
gactggctatccagaagtgggtttccagctattgcgatacatggtgacaaagttcaattt
gaacgggaacgggccttgaaatctttcaaatctggtaatactccgattttagttgcgact
gatgttgcttcgcggggactggatatcccccatgtggcacatgttataaactttgacttg
cctagagacatagatgactacgtgcatagaattggaagaacaggacgtgcggggaaatct
ggtttagccactgctttcttcagcgacaagaatagccctattgcaaaggctcttgtggga
ctcttgcaggaagctaaacaagaagttccgtcttggctcaaccaatatgctgagtataca
ccatctggtggacgtggtcgtagttttggagctcaccgttacaccagtggtagttatggt
ggtcgtgattttcgtaatgccaccgaacctgaggtgcagaactacaactgctatagtacc
tatggcaatgcgaatcatgctatggagttttactctgacaccacgtacactgatacctct
tatgacatacagaactcccatagagattcctcttttgacagtttgaatgaggcttctgcc
cgccgcaattattatcagactggtgttaactcaggtgttgacttatatggtgttgtggtg
gaagaagatgggccatgtggttatgaatctatcgttgccactggttgggattag
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