Cajanus cajan (pigeon pea): 109813241
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Entry
109813241 CDS
T04868
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109813241
09123 Folding, sorting and degradation
03018 RNA degradation
109813241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109813241
03041 Spliceosome [BR:
ccaj03041
]
109813241
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109813241
mRNA degradation factors
5'-3' decay
Lsm complex
109813241
Spliceosome [BR:
ccaj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109813241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
109813241
NCBI-ProteinID:
XP_020232990
LinkDB
All DBs
Position
Unknown
AA seq
88 aa
AA seq
DB search
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPEPDS
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaacccgtcgcagcttctcccatcagaattgatcgaccggtgcataggatca
aaaatatgggtgataatgaagggtgacaaggagcttgttggcactcttagaggctttgat
gtttatgtcaacatggtccttgaagatgttactgaatatgagatcactgctgaagggaga
cggataaccaagctcgatcagattttactcaatggaaacaacattgccattttagttcct
ggtggttcacctgagccagactcatag
DBGET
integrated database retrieval system