Cajanus cajan (pigeon pea): 109813396
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Entry
109813396 CDS
T04868
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109813396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109813396
03036 Chromosome and associated proteins [BR:
ccaj03036
]
109813396
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109813396
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109813396
mRNA degradation factors
5'-3' decay
Decapping complex
109813396
Chromosome and associated proteins [BR:
ccaj03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109813396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
TFIIA
Motif
Other DBs
NCBI-GeneID:
109813396
NCBI-ProteinID:
XP_020233165
LinkDB
All DBs
Position
Unknown
AA seq
507 aa
AA seq
DB search
MNTNNNRERYPPGIGLARGAFNPNLHLNRNPNLNHNLNHNHNHSFQVRPPFQQQPHYVQR
HLLQPLQQQQQQQQQQQQQQWLRRDVNAVDEVEKTVQSEAVDSSSSQDWKARLKIPPPDT
RYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNG
TGKTAAFCIPALEKIDQDINVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTS
LKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCAMLVMDEADKLLSPEFQPSIEQLI
HFLPTNRQILMFSATFPVTVKDFKDRYLHKPYVINLMDELTLKGITQFYAFVEERQKVHC
LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGA
CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRF
NLYRIEQELGTEIKQIPPQIDQAIYCR
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccaacaacaacagagagaggtaccctcccgggattggcctcgcccgaggtgct
ttcaatcccaacctccacctcaaccggaatcccaacctcaaccacaacctcaaccacaac
cacaaccactcgtttcaggtccggcctccgttccagcaacaaccgcactatgtgcagagg
catttgttgcaaccactgcaacagcagcagcagcagcagcagcaacagcaacagcagcag
tggctcagaagagacgttaacgccgttgacgaggtcgagaagaccgtgcagtccgaagcc
gtggattccagtagttcacaagattggaaagcaagactaaagattccaccacctgataca
cgctataggacagaggatgtaacagcaactaaagggaatgaatttgaggattactttttg
aagcgagagcttctcatgggaatatatgaaaagggttttgaaaggccttctcccatccaa
gaagaaagcatccctattgctctaactggtagtgacattcttgcaagggctaaaaatgga
actggcaaaacagctgcattttgcattcctgctctggaaaaaattgaccaggatattaat
gttattcaagttgttatactggtcccaacccgagagttagctttgcaaacatctcaagtg
tgtaaagagcttggaaagcacttgaaaattcaagttatggttacaaccggtggtaccagc
ctgaaggatgatatcatgcgcttatatcaaccagttcatttacttgttggaactccagga
agaatattagatcttgctaagaaaggtgtttgtattctgaaagattgtgctatgcttgtt
atggatgaggctgataagcttctgtccccagaattccaaccatctatagagcagctgatt
cattttctaccaacaaaccgtcaaatcttgatgttttcagcaacatttcctgttactgta
aaggatttcaaagataggtatcttcataagccttacgtcatcaaccttatggatgagctt
actctgaagggtattacgcaattttatgcatttgtggaagaaaggcagaaagtccactgc
ttaaatactctattttctaagcttcaaataaaccagtctatcatcttctgcaattcagtg
aatcgggttgaactccttgccaagaaaatcactgaacttggctattcgtgtttttatatt
catgcaaagatgctgcaagatcatcgtaatagggtgtttcatgacttccgtaatggtgca
tgtcgaaatcttgtttgtactgatctttttactagaggaattgacattcaagcagttaat
gttgttattaattttgattttccgaagaactcggagacttatttgcatagggttggtcgt
tcagggaggtttgggcaccttgggcttgcggtgaacttgattacttatgaggaccgcttt
aatttatataggattgaacaagaacttggaactgaaataaagcagattccaccacaaatt
gatcaggcaatttattgccggtga
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