Cajanus cajan (pigeon pea): 109814086
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Entry
109814086 CDS
T04868
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109814086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109814086
03012 Translation factors [BR:
ccaj03012
]
109814086
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109814086
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109814086
Translation factors [BR:
ccaj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109814086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
DEAD
R3H
HA2_C
HA2_N
Ank_2
nSTAND3
AAA_19
AAA_22
ATPase
Ank_5
AAA_14
AAA_23
ABC_tran
Rad17
AAA_7
PhoH
NPHP3_N
AAA_16
NACHT
AAA_11
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
109814086
NCBI-ProteinID:
XP_020234022
LinkDB
All DBs
Position
2:13895032..13904419
Genome browser
AA seq
1153 aa
AA seq
DB search
MTHKREKKGGEALLHQNPKVDEVTRIRISQILEQFRASNDEVYKFDASLSNQERALVHQM
ALKMGFRSKSYGLGKERRVCVQKIKKKVDTNNGFRSLPHFAFSGEAKWVLGDLFAHYPPG
DGNLWEMVGEHSDTTGKTRQRQDDIFSRPSMSKADISRKLEALASRMNNVPNLKQIIEDR
SKLPIASFKDAITSTVESHQVVLISGETGCGKTTQVPQFILDHMWGKGEVCKIVCTQPRR
ISATSVSERIASEKGETIGENVGYKIRLESRGGRQSSIVLCTTGVLLRLLVSRGSHLSKI
GHVKDDISGITHIIMDEIHERDRYSDFMLAIIRDMLPSYPHLRLILMSATFDAARFSQYF
GSCPIINVPGFTYPVKSFYLEDVLSIVKSSKDNHLDSSTCSIPINSSELSEEEKLSMDEA
INIAWSNDEWDLLLELVSSEGTPELFNYQHSLTGLTPLMLFAGKGRVGEMCMLLSSGADC
YLKAKDGMTALEIAERENQPEAAEIMKKHMDNDFSNSMEEKKLLDKYLATVNPELVDVFL
IEQLIRKICIDSTDGGILVFLPGWDDINRTRERLLASSFFKNSSKFMLISLHSMVPSMEQ
KKVFKRPPHGCRKIILSTNIAETAITIDDIVYVINTGRMKEKSYDPYNNVSTLQSSWISK
ASAKQREGRAGRCQPGICYHLYSRIRAASLPDFQIPEIRRIPIEELCLQVKLLDPSCKVE
EFLGKTLDPPVFESIRNAILVLQDIGALSNDEKLTQLGEKLGSLPVHPLICRMLFFAILM
NCLDPALTLACASDYRDPFTLPMLPEERKRATVAKSELACLYGGCGDQFAILNAFECWNN
AKKMGLESRFCSQYFVSSSAMHMLSGMRKQLQAELIRNGFIPDDVSSYSANARNPGVLHA
VLVAGLYPMVGRFLPNKSGKRVIVETSSGDKVRLHNHSTNFKLSFKKNLDHTLIVYDEIT
RGDGGVNIRNCTVVGPLPLLLLSTEIAVAPGENDDRDDDDAGGSEDEAGSEDGMEFDTKT
SEDKLMSSPDNMVKVIMDRWLYYRSTAIDVAQLYCLRERLSAAILYKVTHPRNALPPIMA
ASVEAIANILSCDGCNGMPTMLEGVDSLTTMVNATTLGKPATGQKRLGKRPKGAPAELIN
YDVRQFSGPSSRS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgacccacaaacgagagaagaaaggaggagaggcacttctccatcaaaaccccaaagtt
gatgaagtcaccaggattcgcatttcccagattctagaacagttcagagcttccaatgat
gaagtgtacaagtttgatgctagtttgtccaaccaagagcgcgctttggtgcatcaaatg
gccctcaaaatggggtttagatctaaaagttatgggcttgggaaggagaggagggtatgt
gtgcaaaaaatcaaaaagaaggttgacactaataatgggtttcgaagtcttcctcatttt
gcattttctggagaggcaaagtgggttctgggcgatttatttgctcattatccacctggt
gatggaaacttgtgggagatggttggagaacatagtgatactactggcaaaacaagacaa
aggcaagatgatatttttagcaggccctctatgtctaaggctgacatttctaggaaattg
gaagctcttgcttctagaatgaacaatgttcctaacttgaaacagatcattgaagataga
tctaagcttccaattgcatctttcaaggatgcaattacatcaactgttgaatctcaccag
gtagttctcatatctggtgagactggttgcggaaagactacgcaggtcccgcaatttatt
ttggatcatatgtggggtaagggagaggtatgtaaaatagtttgcactcaacctcggcgt
atctctgcaacttcagtttctgagagaatcgccagtgagaaaggagagactattggagaa
aatgtgggatataagatacggttggaaagcagaggtggaaggcaatcatcaattgtgcta
tgtactactggagtgctattaaggttgttggtttcaagaggttctcatttgtcaaaaata
gggcatgtgaaggatgacatttctggaatcactcatataattatggatgaaattcatgaa
agggatcgatactcagacttcatgttggcaatcatcagagacatgctcccttcatatcct
cacctacgtctgatattaatgagtgctacctttgatgctgcgagattttctcaatatttt
gggagctgcccaatcatcaatgttccgggtttcacttatccggtcaaaagtttttatttg
gaggatgtactttctattgtaaaatctagcaaagacaatcatcttgatagttccacatgt
agtattccaataaactctagtgagctaagtgaagaagagaagctttccatggatgaagct
attaatattgcttggtctaatgatgagtgggacctgctgttagaattggtttcttctgaa
gggaccccagaactatttaattaccaacattctttaactggccttactccattaatgttg
tttgctggaaaaggtagagtgggtgaaatgtgcatgctcttatcttccggggcagattgc
tatttaaaggccaaagatggaatgactgctctggagattgctgaaagggaaaaccaacca
gaagcagctgaaattatgaagaagcacatggataatgatttttccaactccatggaagag
aagaagttacttgataaatacctggcaacagtcaacccagaacttgttgatgtatttttg
attgagcagctgataagaaaaatatgcattgattcaacagatggagggatccttgttttt
cttccaggctgggatgatataaatagaacacgcgagagattgcttgcatcatcatttttc
aagaattcctcaaagtttatgctcatatctctgcattcaatggttccaagcatggaacaa
aagaaggtttttaagcgcccacctcatggttgtcgcaaaattatactatcaactaacatt
gctgaaacagctatcaccattgatgatatagtgtatgtcataaacactggacgaatgaaa
gaaaaaagttatgatccttataacaatgtgtcaactcttcagtcatcttggatttcaaaa
gcaagtgctaaacagcgagagggtcgtgctggacgctgtcaacctggaatatgctatcat
ctatattccaggattcgagcagcttccttgccagattttcagattccagaaatcaggaga
atacctattgaggagctttgcctgcaggtaaagttgcttgatccaagttgcaaagtagaa
gagtttctaggcaagacattagatcctccagtttttgagtccatacgcaatgctattcta
gttcttcaagatattggggcattgtcaaatgacgaaaaactcactcaactaggggagaaa
cttggttctcttcctgttcacccattaatctgcaggatgctcttttttgctatattgatg
aattgccttgatccagctttaactcttgcgtgtgcttctgattatagagatccatttacg
cttccaatgttacctgaagaaaggaagagagctacagttgccaaatctgaacttgcttgt
ttatatgggggttgtggtgatcagtttgctatattaaatgcatttgaatgctggaataat
gcaaagaaaatgggtctagaatcacggttttgttctcagtattttgtgtcttcaagcgcc
atgcatatgttatctggcatgcgtaaacaactccaagcagaactcattcgaaatgggttc
attcctgatgatgtttcaagttacagtgcgaatgcacgtaaccctggtgtgctgcatgcg
gttttggtagcaggtttgtatccaatggttgggagatttttaccaaataaaagtggaaaa
agggttatagttgaaacatcaagtggtgataaagttcgcttgcacaatcattccacaaat
tttaagttgtcattcaagaaaaatttagatcacactttaattgtgtatgatgaaattact
cgcggagatgggggtgtgaacataaggaactgcacagttgttggaccacttccacttttg
ctgctttcaacagagattgctgttgctccaggtgaaaatgatgacagagatgatgatgat
gcaggagggagtgaagatgaagctggaagtgaagatgggatggagtttgataccaagacc
agtgaggataagttgatgtcttctcccgataatatggttaaagtaatcatggaccgttgg
ctttattatcggtcaacagcaattgatgttgctcagctatactgcttgagagagcgatta
tcagcagcaattttatacaaagtgacacatccaagaaatgctcttcctccaatcatggca
gcctccgtggaagccatcgctaatattctgtcttgtgatggatgcaatggcatgcccacg
atgttagaaggtgtcgacagtttgaccactatggtaaatgcaacaactttaggcaagcca
gctacagggcaaaagcggttgggtaagagaccaaaaggagcccctgcagagcttataaac
tatgatgtgcgccagttctctggcccttcttctagatcatag
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