Cajanus cajan (pigeon pea): 109814476
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Entry
109814476 CDS
T04868
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109814476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109814476
03012 Translation factors [BR:
ccaj03012
]
109814476
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109814476
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109814476
Translation factors [BR:
ccaj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109814476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
nSTAND3
AAA_22
ATPase
AAA_19
Dicer_dimer
AAA_11
T2SSE
PhoH
Motif
Other DBs
NCBI-GeneID:
109814476
NCBI-ProteinID:
XP_020234505
LinkDB
All DBs
Position
2:32883083..32898194
Genome browser
AA seq
1180 aa
AA seq
DB search
MLSIPQPSCIPKTLKPSIPFPLPPMKDRRTLSSNGSIYIPPHHRLRSVANCNNSPSPLRA
KLHENPTHAATTLQPQLPQNARSRFVSAYDDTVSEEGSDREFEPPSLPNASPNDNTDEWK
RNFTTLLNDKSRHELISREKKDRRDFERIAVLASRMGLYSHMYAKVVVFSKVPLPNYRYD
LDDRRPQREVSLSIATFTRVNAHFEEYLSQKSRANKSFSDLSSARSSSNGSIATDEGLFE
QSEPLASNKAVMEKILCQRSLQMLDQQQAWQESLEGRTMLEFRRSLPAYKKKEAILSVIS
RNQVVIISGETGCGKTTQIPQFILESEIESVRGAACSIICTQPRRISAMSVSERVAFERG
EKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRKLKGVTHVIADEIHERGMNED
FLLIILKELLPHRPELKLILMSATVDAELFSSYFNGAPAMYIPGFTYPVKTHFLENILEM
TGYRLTPYNQIDDYGQERMWKMNKQAPRKRKSQIASAVEDAIGAADFKDYSPQTQESLSC
WNPDCIGFSLIEYILCNICENERPGAVLVFMTGWDDISSLKEKLLGHTVLGDPNRVLLLT
CHGSMASSEQKLIFEEPEDGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNT
PCLLPTWISKVSAQQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQI
KSLRLGSISEFLSRALQSPEILAVQNAIEYLKIIGALDGNENLTILGHYLTMLPMEPKLG
KMLILGAIFNCLDPILTVVAGLSVRDPFLTPLDKKDLAEAAKSQFCGAYSDHLALVRAYE
GWKDAEMDLGGYEYCWKNFLSLQSMKAIDALRREFICLLKDTGLVDSNTASCNGWSSDVN
LIRAVICYGLYPGICSVVHNEKSFSLKTMEDGQVLLYSNSVNARETKIPYPWLVFNEKIK
VNSVFLRDSTAVSDSMVLLFGGSLLKGDADNHLKMLGGYLEFFMEPTVAEMYQSIRRELD
NFIQSKLLFPRMGIHWYHDLLSAVRLLISNDKSEGRFVFGRRVIKPSKKSIMLASHPPLV
SRNESGPGGDNSKSQLQTLLTRAGYAAPMYKTKQLKNNQFQATVEFNGMQIMGQPCNNKK
SAEKDAAGEALQWLMGGKQSGREYINHVSMLLKKSKKDHN
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgctctccattccgcaaccctcgtgcattcccaaaaccctaaaaccttccattcccttt
ccgcttccgcccatgaaggaccgccgcacgctgtcctccaatggctccatctacattccg
ccgcaccaccgtctccgctccgtcgccaattgcaacaactctccctctccgcttcgcgcc
aaactccacgaaaaccctacacacgccgccactactctgcaaccgcagcttccccaaaac
gcgcgttcgcgcttcgtctctgcttatgacgacaccgtttccgaggaaggctccgatcgt
gaatttgaacctccatcactaccgaatgcttcccctaatgataacactgatgagtggaag
cggaacttcaccacgcttttaaatgacaagagcaggcatgagttgatctcgagagagaaa
aaggataggcgtgattttgaacgaatagcagttttggcaagcagaatggggttgtatagc
catatgtatgctaaggttgttgtcttcagtaaggtcccacttccaaattacagatatgat
ttggacgatcggcggcctcagagggaggtgagcttgtctatcgccacatttacacgagtt
aatgcacactttgaggaatatcttagccaaaaatccagggcgaacaaaagcttttcagat
ttgtcatctgcaagatcaagcagtaatggcagtattgctacggatgaaggactttttgag
caatctgagccactagcatcaaataaggctgttatggagaaaattctatgtcagagaagc
ttacaaatgcttgatcagcagcaagcatggcaggaatctcttgaaggaagaacaatgcta
gaatttcgtagaagtctccctgcttataaaaagaaagaagcaatattatcagtcatatca
aggaatcaggtagttatcatttcaggtgaaacaggttgtggcaagacaacacaaattcca
caatttattttagaatctgagatagaatcagttcgtggagctgcttgtagtattatatgc
acacagccaagacgcatttcagccatgtctgtttctgaaagggttgcttttgagagaggg
gagaaattgggcgaatctgttggatataaagttcggcttgagggtatgaaagggagggat
acccatctcctcttttgcaccacaggcatcttattaagaagattactagttgatagaaag
ttaaaaggtgtaactcatgtaattgcggatgaaattcatgagcgagggatgaatgaagat
tttctgcttattatccttaaagaactccttccccatcgaccagaactgaaactaattttg
atgagtgctacggtagatgcagagctcttttcttcgtactttaatggggctccagctatg
tatattccgggcttcacataccccgttaaaactcattttttggagaacattcttgaaatg
acgggctacagattgactccttacaatcaaattgatgattatggtcaagaaaggatgtgg
aaaatgaacaaacaggccccaagaaagaggaaaagccaaattgcttccgctgtagaggat
gcaattggagctgctgatttcaaagattacagcccacagacacaggagtctttgtcatgt
tggaatcctgactgtattggttttagtctcatagaatatattttatgcaatatatgtgag
aatgaaaggcctggtgctgttttggttttcatgactggatgggatgatataagctctctg
aaagagaagctcctgggacatactgttttgggtgatccaaaccgtgttttgttgcttact
tgtcatggctcaatggctagttcagagcagaaattaatatttgaagagcctgaagatgga
gtaagaaaaatagtgctagcaacaaatattgctgaaacaagtatcacaataaatgatgtt
gtttttgttcttgactgtggaaaggcaaaagaaacatcatatgatgcactgaataacacg
ccttgtttacttcctacatggatctctaaggtttctgctcaacaaagaagaggaagagct
ggtcgggttcaaccaggagagtgttaccatctctatcctagatgtgtatatgatgctttt
gcagagtatcagttgccagaaattttgagaacacctttgcaatctctctgtttacaaatc
aaaagtctaagacttggaagtatatctgagttcttgtctagggctttgcaatctcctgag
atacttgcggtacaaaatgcaattgaatatttaaaaataattggggctttggatgggaat
gagaatctcactattctagggcactatctgacaatgcttcctatggaacccaaacttggc
aagatgctaatattaggtgctattttcaattgcctggatcccatattaactgttgttgcg
gggcttagtgtgagagatccttttctaacaccattggataaaaaagatcttgcagaggca
gcaaaatctcaattctgtggtgcatacagtgaccaccttgcacttgtaagagcatacgaa
ggttggaaagatgctgaaatggaccttggtgggtatgaatactgctggaaaaattttctc
tccttacaatctatgaaagctattgatgctcttcggagggagttcatttgcctgctcaag
gatacaggattagttgatagcaatacagccagctgcaatggatggagctctgatgtaaat
cttatccgagcagttatttgctatggtctatatcctggaatttgttctgttgtgcataat
gagaaatccttctctttgaaaacaatggaggatggtcaagtgctcctatactcgaactca
gtgaatgcccgggaaactaaaattccttatccatggctagttttcaatgagaagataaaa
gtgaactcagtttttctccgtgactcaacagctgtatctgattcaatggtgcttctgttt
ggtggaagcttattgaaaggagatgctgataatcacttaaaaatgttaggaggatatctt
gagtttttcatggagcccactgttgctgaaatgtaccagagtataaggagagagcttgat
aacttcattcagagcaaactactttttccaagaatgggcatacactggtatcatgatctc
ctgtctgcagtacggctgctgatttcgaatgacaaatctgaaggtagatttgtatttggt
cgccgggtcattaaaccatcaaagaaatctattatgctggcctcacatccacccttggtt
tcaaggaatgagagtggacctgggggtgataattctaaaagtcagctccaaaccttgctt
acgagagcaggctatgcagcacccatgtacaaaactaaacaattgaagaacaatcagttt
caggctacagtcgaattcaatggaatgcagataatgggtcaaccatgtaacaataaaaag
agtgcagaaaaagatgctgcaggtgaggcgctgcaatggctgatgggtggaaagcaatca
ggcagggagtatatcaatcacgtgtcaatgttacttaagaaaagtaagaaagatcacaat
taa
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