Cajanus cajan (pigeon pea): 109814742
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Entry
109814742 CDS
T04868
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109814742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccaj03041
]
109814742
03009 Ribosome biogenesis [BR:
ccaj03009
]
109814742
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109814742
Spliceosome [BR:
ccaj03041
]
Complex A
U2 snRNP components
U2 related factors
109814742
Complex B
109814742
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
109814742
Ribosome biogenesis [BR:
ccaj03009
]
Eukaryotic type
90S particles
Helicases
109814742
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
T2SSE
FtsK_SpoIIIE
Cas3-like_C_2
AAA_7
Flavi_DEAD
AAA_30
AAA_29
NACHT
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
109814742
NCBI-ProteinID:
XP_020234830
LinkDB
All DBs
Position
Unknown
AA seq
724 aa
AA seq
DB search
MGTERKRKVSLFDVVDDSVAKMAKTNGGANNSVVNALINRWNAKPYSQRYFDILEKRKTL
PVWHQKDDFLKVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRKKMMIACTQPR
RVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERY
KVIILDEAHERTLATDVLFGLLKEVLKNRPDMKLVVMSATLEAEKFQGYFFGAPLMKVPG
RLHPVEIFYTQEPERDYLEAGIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEIAN
LGDQVGPVKVVPLYSTLPPAMQQKIFEPPPPPLKEGGPPGRKIVVSTNIAETSLTIDGIV
YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDL
QPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGN
LTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAK
ARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMSRFNLK
LCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWV
IYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLEKLYKKREKEKEEA
RSRR
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagagaaagaggaaggtgagtttgttcgatgtggtagacgactctgtggcc
aagatggcgaaaaccaatggcggcgccaataacagcgttgttaacgctctcatcaatcgc
tggaacgcaaagccttactcccaacgctacttcgacattttggagaagaggaaaaccctc
cccgtttggcaccagaaagacgactttttgaaggtcctcaaagataaccagactttgatt
ctcgtcggtgaaactggtagtggcaaaaccactcagattcctcagtttgttttggatgct
gtcgaattagagacacccgataaacgtaagaagatgatgattgcgtgcactcagcctcgg
agagtggctgcgatgtctgtttcgcgtcgtgtggccgaggagatggatgtaactattggc
gaagaggttggttacagtatcagatttgaagactgcagtagtgcaaggacggttttgaag
tatcttacagatggtatgctcttaagagaagcaatgacagatccgcttttggaacgatac
aaggttattattcttgatgaggctcatgagaggactttggccacggatgtgctgtttggc
ctactgaaggaagtgcttaaaaatagacctgacatgaagttggttgttatgagtgcgact
cttgaggctgaaaagtttcagggctatttttttggtgcccctctcatgaaagttcctgga
aggctacatcctgttgaaattttttatactcaggaacctgaaagggattacttggaggct
ggcattaggacagtggtacagatacacatgtgtgagcctcctggtgatatacttgtgttt
ctgaccggagaggaagagatagaagatgcttgccgcaaaataaataaagaaattgctaat
ctgggagatcaggtgggccctgtcaaagtggtacccctgtattctacccttcctccagct
atgcagcagaagatttttgagccaccaccacctccactgaaagagggtgggccacctgga
aggaagattgtggtatcaacaaacatagcagaaacttccttgacaattgatggcattgtt
tatgtcattgatcccggttttgctaagcagaaggtttataacccacgagttcgtgtggag
tctttgttagtatcaccaatatcaaaagctagtgcacatcagagatcagggcgtgccgga
agaactcaaccagggaaatgctttagactttacaccgagaaaagtttcaataatgatctt
cagcctcagacctatcctgaaattttaagatcaaatcttgccaacacagttcttactttg
aagaaactggggatcgatgatttagtgcattttgatttcatggaccctcctgctcctgag
accttaatgcgtgcattggaagtgttgaattacctgggtgcgctggatgacgaaggtaac
ctaacaaaactgggtgagattatgagtgaatttcccttggacccacagatgtcaaagatg
ctcgttgttagtcccgaattcaactgttcaaatgagattctgtcagtttctgccatgctc
tcagtacccaattgctttgtccggcctagggaggcacaaaaagctgcggatgaagctaaa
gctaggtttgggcacattgacggagatcatctcactctcttgaatgtctatcatgcatac
aagcaaaataatgaggatccctcttggtgctatgataattttgttaatcatagggcattg
aaatcagctgataatgttagacaacaattagtgcggatcatgtcccggtttaatctgaag
ctatgcagcactgactttaatagccgtgactactatgtcaacatacgaaaagctatgcta
gctgggtatttcatgcaggtagctcatctggagcgtactgggcactacttgacagtgaaa
gacaaccaggtggtgcatttgcatccatctaattgtctagaccacaaacctgaatgggtt
atttataatgaatatgttcttacaagtcggaattttattcgtactgttacagacatacga
ggggaatggttggttgatatagcaccacattactatgatttgtctaattttccacaatgc
gaggcaaagcgtgttcttgagaaactttacaagaagcgagagaaggaaaaggaggaagcc
aggagccgcagatga
DBGET
integrated database retrieval system
