Cajanus cajan (pigeon pea): 109814748
Help
Entry
109814748 CDS
T04868
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109814748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccaj03041
]
109814748
Enzymes [BR:
ccaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109814748
Spliceosome [BR:
ccaj03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109814748
Complex B
109814748
Complex C
U2 SnRNP specific factors
109814748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109814748
NCBI-ProteinID:
XP_020234842
LinkDB
All DBs
Position
Unknown
AA seq
770 aa
AA seq
DB search
MSKRKFGFEGFGINRQSTYSFERSQPPQRLYVPPSSRHGHDNYEDTDLDNIDYDDNNNEE
GNKSSAADNDDGEIDPLDAFMEGIHEEMRAAPPPKPKEKAEDRYRDDDDDDPMESFLKAK
KDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIVIDKKKIEPIPALDHSS
IDYEPFNKDFYEETPSISGMSEQDVSEYRKSLAIRVSGFDVPKPIKAFEDCGFPSQIMNA
IKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP
IGVICAPTRELAHQIYLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRL
IDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEK
LAREILSDPIRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPEMIDQGDTLVFASK
KATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGFYHVLIATDVAARGLDIKSI
KSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSV
ELMDLAMKDGRFRSKRDARKGGGKKGRGRGGGGGGRGVRGVDFGLGIGYNPESNNAPSNT
VPSRSAAVNSLRTGIMSQFRSNFVAASSNSQSQGLGNNTSMAANKRPALPGFVSGGSIGG
DINTYQHTASPSPATSAVNSTSQSSGVNPGQNSTNSSKPKERRRPSGWDR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggaaattcggattcgaaggcttcggcataaaccgccaatccacctacagc
ttcgagcgatctcaaccccctcagcgactctacgtccctccctcctcgcgccacggccac
gacaactacgaggacaccgacctcgacaacatcgactacgacgacaacaacaacgaagag
gggaacaagagcagcgcagccgacaacgatgacggtgaaatcgaccccctcgacgccttc
atggagggcattcacgaggagatgcgggcggcgccaccgcccaagcccaaggagaaggcg
gaggaccgataccgcgacgacgacgacgacgaccccatggagagctttttgaaagcgaag
aaggatttagggttgaccctcgcctcggaggcgctgcacgctgggtacgattccgatgag
gaggtttatgctgctgccaaagctgttgacgctggtatgattgagtatgattccgatgat
aatcctattgttattgacaagaagaaaattgaacccattcctgccctcgatcactcttcc
atcgattacgagcccttcaataaggatttctacgaggagacaccttctatatcaggtatg
agtgagcaggatgtaagtgaatacaggaagagtttggctattcgtgtatccggttttgat
gttcctaagccaataaaggcatttgaggactgtggttttccttctcagattatgaatgct
attaaaaagcaggggtatgagaagcccacgtctatacaatgtcaagctttgccagttgtg
ctttctggcagggatatcattggtatagcaaaaactggttctggtaagactgctgctttt
gtgcttcctatgattgtgcacatcatggatcagcctgagcttcagaaggaggaggggccc
ataggggtcatatgtgcacctaccagagagttggcacatcagatatatctggaggcaaag
aaatttgcaaaagcatatggagtgcgtgtctctgctgtttatggtggaatgtcaaaactt
gaacagttcaaagaactcaaggcgggatgtgagatagttgttgctacccctggcagactg
atagacatgttaaaaatgaaggcattgacgatgatgagagcaacttacctggtgcttgac
gaagctgataggatgtttgatcttggatttgagccgcaagtaaggtccattgtggggcag
attaggccggaccgccaaactttactcttttctgcaacaatgcctcgtaaagttgaaaag
ttggccagggagatcctttctgatcctattagagtaactgttggggaggtggggatggca
aatgaagatattactcaagttgttcatgtaattccttccgatgctgagaaattgccttgg
cttctagaaaagttgcctgaaatgattgatcaaggtgataccctagtgtttgcttccaaa
aaggctacagtggatgaaattgaatcacaattggctcagagaggctttaaagttgctgcc
ctgcatggtgataaagatcaagcttctcgtatggatattttacagaagtttaaatctggc
ttctaccatgtgctcattgcaactgatgttgctgcccgtggtcttgacatcaagtcaatt
aagtcagttgtaaactttgatattgcaaaagatatggacatgcatgtccatcgcattgga
aggacaggccgtgctggtgacaaggatggagttgcatacactctcataactcagaaagaa
gcacggtttgctggagaattggttaatagcttagttgctgctggtcagaatgtgtcagtg
gagttgatggatcttgctatgaaggatgggagattcaggtcgaaacgtgatgcaagaaaa
ggaggtgggaaaaagggcagaggtagaggtggtggcgggggtggccgaggtgtgcgtggt
gtggattttggcttgggcattggatataatcctgaatcaaataacgcaccatctaacaca
gttcctagtcgatctgctgctgtaaattctctgcgaacaggaattatgtcgcaatttcga
agtaactttgttgctgcttcatcaaactctcagagtcaaggattaggtaacaatacaagc
atggctgcaaataagagacctgcactccctggtttcgtatctggtgggtcaattggtggt
gacataaatacttatcagcatactgcttcacccagtcctgctacatcagcagtaaattcc
accagtcaaagttccggagtaaatcctggtcagaacagcacgaacagttctaaacccaaa
gaaaggaggaggccatcaggatgggatagatag
DBGET
integrated database retrieval system
