Cajanus cajan (pigeon pea): 109815609
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Entry
109815609 CDS
T04868
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
109815609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccaj03021
]
109815609
03019 Messenger RNA biogenesis [BR:
ccaj03019
]
109815609
Transcription machinery [BR:
ccaj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
109815609
RNA polymerase I system
109815609
Messenger RNA biogenesis [BR:
ccaj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
109815609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW4_SPT5
KOW6_SPT51-2
KOW2_Spt5
KOW
KOW7_SPT5
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
109815609
NCBI-ProteinID:
XP_020235958
LinkDB
All DBs
Position
2:complement(4228511..4234949)
Genome browser
AA seq
1043 aa
AA seq
DB search
MSHRGMDDDEEYEEEEEEEQVADFDDEPEEEEDHRRGRAGGGGGRKRRRSGFIDDDAEEV
DEDEDEDDDEDFDGRGGGGRRRQYKKVSASNFFDEEAVVDSDEEEEEEEGEDDFIVEGGA
DLPEEDDGRRMRNSRMLPPHHQEDHEDLEAVARSIQERYGRRLADYDEETTDVEQQALLP
SVRDPKLWMVKCAIGRERETAVCLMQKYIDRGSELQIRSAIALDHLKNYIYVEADKEAHV
REACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVD
NVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHKRDAY
GERFDAIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGESGDGDVASLSTLFA
NRKKGHFMKGDAVIVLKGDLKNLKGKVEKVDEDNVHIKPEMEGLPKTIAVNEKELCKYFE
PGNHVKVVSGAQEGATGMVVKVEQHALILISDTTKEHIRVFSEHVVESSEVTTGVTRIGD
YELRDLVLLDNMSFGVIIRVESEAFQVLKGVPDRPEVVLVRLREIKCKIEKKISVQDRFK
NTVSSKDVVRIVDGPCKGKQGPVEHIYRGILFIFDRHHLEHAGFLCAKAQSCVVVGGSRS
GGDRNGNAYSRFASLRNSSCIPPSPRRFSRGGGANDSGGRHRGRGGRGHDGLAGTTVKVR
QGPYKGYRGRVIDDKGSSVRVELESQMKVVTVDRNHISDNVAVTPHRDTSRYGMGSETPM
HPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSP
QYQPGSPPSRPYEAPTPGAGWASTPGGNYSEAGTPRDNSAYANAPSPYLPSTPGGQPMTP
SSASYLPGTPGGQPMTPGTGGMDMMSPVLGGDHEGPWFMPDILVNVHRAGDESIGVIREV
LPDGSYKVGLGSSGNGETITGLPNEIEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGI
VKVDDTLDVKILDLVILAKLAQP
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaccgcggaatggacgacgacgaggagtatgaggaggaggaagaggaggagcag
gtcgccgacttcgacgacgaaccggaggaggaagaggaccaccgccgtggacgcgctggc
ggcggcggcggcaggaagcgccgaagatccggcttcattgacgatgacgccgaagaggtc
gacgaggacgaggacgaggatgacgatgaggatttcgacggtcgaggaggcggtggtcgg
aggcgccagtacaagaaggtttccgcttctaattttttcgacgaggaagccgttgtggac
agcgacgaggaggaggaagaggaagaaggcgaagacgacttcattgttgagggtggagct
gatctgccggaagaagatgacgggagaaggatgcgtaatagccggatgcttcctcctcat
caccaagaagatcatgaggatcttgaagctgtggccagaagcatccaggaacgatatgga
aggcgtctggcggattatgatgaagaaaccacagatgtagagcaacaagcacttttgcca
tctgtgagagatccaaagctgtggatggtcaaatgtgcgattggtcgtgagagagaaaca
gctgtttgcctcatgcaaaagtacatagatagggggtctgagttacaaatcagatcagct
attgctcttgatcatctaaaaaactacatatatgtggaagcagataaagaagcccatgtc
agagaggcttgcaaaggtctacgcaatatatttggccaaaaaataacacttgttccaatc
agagaaatgactgatgttctttcggttgaaagcaaagctattgatcttgctagagatact
tgggtcagaatgaagatcgggacatataaaggggaccttgccaaagtagtggatgtcgat
aatgtgcggcagagggttactgtgaaattaattccaaggatagacttacaggctcttgca
aacaaattggaaggtagagaagttgtgaaaaagaaagcttttgttcctcctcctcgtttt
atgaatgttgatgaagctagggaactgcacatccgtgtagagcataaacgtgatgcctat
ggggaacgatttgatgcaattggaggcatgatgttcaaagatggattcttatacaaaact
gtatcaataaaatccatcagtgctcagaacatcaaacctacttttgatgagcttgaaaaa
tttcgtaaaccgggtgagagtggagatggtgatgtagctagtctgtcaactttgtttgca
aacaggaagaaaggacatttcatgaaaggtgatgctgttattgttctcaagggcgattta
aagaacttgaaggggaaggtagagaaagttgatgaagataatgttcatataaaaccagaa
atggaaggactaccgaaaactattgctgtgaatgagaaggaactttgtaaatattttgaa
cctgggaaccacgttaaggttgtttctggtgctcaagagggggctacgggcatggttgtg
aaggtggagcaacatgccctaatcttaatatccgatacaacaaaagaacatatccgcgtg
ttttcagaacatgtagtagaaagttcagaagtaactactggagttacaagaattggggac
tatgaacttcgtgatcttgtattgctagataatatgagctttggtgtgataatacgtgta
gaaagtgaggcatttcaggttcttaagggggttcccgacagaccagaagttgtgcttgtt
agattaagagagatcaagtgtaagatagagaagaaaataagtgtgcaggataggtttaag
aatacagtatcatcaaaggatgttgtgcggattgttgatggtccctgcaaaggaaaacaa
ggtcctgtggagcacatatatagaggaatcttgttcatctttgatcgccatcatcttgaa
catgcaggctttttatgtgctaaggcccaatcatgtgtagttgtgggaggttcacgctcc
ggtggtgacagaaatggcaatgcatactcaagatttgctagtcttagaaattcaagttgt
atcccaccgtcgccaagaaggttttctcgaggaggaggggcaaatgattctggagggaga
cataggggtaggggtggaaggggtcatgatggtttggcaggtacaactgttaaagtacgc
cagggtccctataaaggttaccgtgggcgtgttatagatgacaaaggctcatcagttcgt
gttgagttggagtcccaaatgaaggttgtgacagttgaccgtaaccatatatctgacaat
gtggctgtaaccccacaccgtgatacatctcgctatggaatgggaagtgaaaccccaatg
catccttctcggactcctttgcatccatatatgactcctatgagagatcctggagcaaca
cctattcatgatggaatgaggacacctatgcgtgaccgggcatggaatccttatactcca
atgagtcctccaagggataactgggaagatggaaatccaggctcttggggaaccagtcca
cagtatcagcccggaagccctccttctcggccatatgaagccccaactcctggtgctggt
tgggcaagcacccccggtggaaattatagtgaagctggaacaccacgggacaattctgca
tatgccaatgctccaagcccatatttaccatcaacacctggtgggcagcctatgacacca
agttcagcatcttatcttcctggtacccctggaggacagcctatgactccgggcacaggt
ggtatggacatgatgtctccagttttaggtggggatcatgaagggccatggttcatgcca
gatatattagtcaatgtacacagggctggagacgaatctattggagttataagagaggtt
cttccggatgggtcttacaaggtaggtcttgggtctagtgggaatggtgaaacgatcaca
ggccttcctaatgaaattgaggcagtggtaccaagaaaatcagacaagataaagattatg
ggtggggcattgcgtggtgccactggtaagttgattggtgtggatggcaccgatggcatt
gtaaaggtagacgataccttagatgttaagattttagacttagttattttggcaaaatta
gctcaaccatga
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