Cajanus cajan (pigeon pea): 109816095
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Entry
109816095 CDS
T04868
Name
(RefSeq) endoribonuclease Dicer homolog 3a isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ccaj
Cajanus cajan (pigeon pea)
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccaj03036
]
109816095
Chromosome and associated proteins [BR:
ccaj03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109816095
microRNA pathway
RISC loading complex
109816095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
ResIII
Helicase_C
PAZ
SWI2_SNF2
dsrm
SNF2-rel_dom
AAA_22
DND1_DSRM
DUF7653
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
109816095
NCBI-ProteinID:
XP_020236554
LinkDB
All DBs
Position
Unknown
AA seq
1628 aa
AA seq
DB search
MALNFNIHDPSHHNQDQSKKRKFEDVDDYSCLESPFSTMNPRRYQIEVFEVARQRNTIAV
LDTGSGKTLIAVMLLKEVGQEIKTSGVKKLIVFMAPTVHLVNQQFKNIKHLTDFQVEEYY
GAKGVDAWNLKTWEKEISNNDVLVMTPQVLLNALRKAFLRIEMISLIIIDECHRAIGNHP
YTQIMKEFYHQADKKPKIFAMTASPVGKKGVTSTMDCEDQISELESILDSQRYTVEDRTE
IDRCIPSAKESCIYYDQARFSALSLKPKIEALWVKMDALLSENHSNYKDVDNKFKTMNQR
MSNELAKIIHCLEDLGLLCAYEAVKICHENFSKIEGECEIYRKGYLQCITIFEEVIKIIE
ESLHLADKKILGDDFDYSKAEDLGFISPKLLELIQLFESFGESSQVLCLIFVDRIITAKV
IERFIKKVPQISHLTVSYLTGNTTSVDALAPKRQKEILDCFHSGKVNLLFTTDVLEEGIH
VRNCSCVIRFDLPKTVRSYVQSRGRSRQANSQYVLMLERGNLKQRNQLFDIIRSERFMND
ASIKKDHEYSTRALITEKIDTYYVESTGASVTLDSSASLIIQYCGKLPRDKYSCAKPSFE
FMPVEGGYKCTLILPPNAAIQAVTGSPGKDIRLARCLACFEACKKLHQIGALNDHLVPFT
EDPSDDDHIVQNKDSSSGAGTTKRKELHGMASIRALSGAWGDKLDGAKFHAYKFEFSCNI
VSEIYSGFVLLIESKLDDDVGNVELDLYLVSKIVRASVSSCGQVDLNAEQMMKAKCFHEL
FFNGLFGRLVSRSKSAGGKSEFLLQKDTKSLWNSKLLYLLLPLEKLNDTCGESLQINWFG
INSCAAAIEFLRRKFSLVTKDCGDNGTITTPPDTRSSEMECEGTNSIHFANCVLGVNNIK
DTIVLAIHTGKIYCILEIVRNLSPESPFDGNKEKSKEFITFSDYYSERYGITLKHPGQSL
LRLKQSHNPHNLLFNFYGDARDKSSQKGPATSKMPAHVHIPPELLYVLNVKRDVLKSMYL
LPSLMYRIESFMLSSQLREEIDGQTSKSNIPSSLILEALTTLRCNEKFSMERLELLGDSV
LKYVVSCHLFLKYPKKHEGQLSARRSWTICNSTLHKLGTDRKLQGYIRDSAFEPRRWVAP
GQHSIYTFHCGCGLETSEVPLDGKFHTEDPKVVVGKFCDRGHRWMCSKTISDCVEALIGA
YYVGGGLFASLNVMKWLGIGAELELSLVDEAITAASLHTSVPKESIASLEKKIGYEFSVK
GLLLEAITHLSEKEVGTGCYERLEFLGDSVLDLLITWHLYESHTVVDPGVLTDLRSASVN
NDNFAQVAVRHNLHQHLRHSSGLLMSQISEYVKVNSESDPKSLPSVRAPKALGDLVESIA
GAILIDSKLSLDEVWKAFYPLLSPIVTPDKLELPPFRELNELCDSLGYFVKVKENSEKKG
STTHVEVSVQLPNALLAKVAYGANKKTAKGEAAFHLLKELEKRGISHGSFVSKGKRDNPD
HIKDSSTKRPSLDETNLTAINISINMKKGGPRTTLFEVCKKLQWPVPSFDSTEYKDRSLF
KSCEALEGSKGLNCFVSKITLCMPNYGNIECKGEARGDKKSSCDSAAVEMLLELQRLGKV
SIDSPLSS
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atggccttgaacttcaacattcatgatccatcacaccacaaccaggaccaaagtaaaaaa
cgaaagttcgaagatgttgatgattattcatgcctggaatcaccgttttccaccatgaac
cccagaaggtatcagatagaggtgtttgaagttgcaagacagaggaacacaatagcagtg
ttggatacaggctccggcaagaccttgattgctgtgatgctattgaaagaggttggtcaa
gaaatcaagactagtggtgtaaagaagctgattgttttcatggctcccacagttcatctt
gtcaatcagcaattcaagaatataaaacatctgacagattttcaagttgaggaatactat
ggagctaaaggagttgatgcatggaatttgaagacgtgggagaaagagattagtaacaat
gatgtactggttatgacaccccaggttcttttgaatgccttaagaaaagcattcttgcgt
atagaaatgataagcctgataattattgatgaatgtcatagagctattggcaaccatccc
tatacacaaataatgaaggaattttatcaccaagctgacaaaaagccaaaaatttttgcg
atgacagcatcaccggtaggaaaaaaaggtgttacctctactatggattgtgaggatcag
atatctgaacttgaaagcattttggattctcagagatatactgttgaagatcggacagag
attgatagatgtatcccttctgctaaagagagttgtatatattatgaccaagcacgattt
tctgctttgagtttgaaacctaagattgaagccctgtgggtcaagatggatgcattatta
tcagaaaatcatagtaactataaggatgtggacaataaatttaagacgatgaatcagcgg
atgtccaatgaacttgcgaaaattatccattgccttgaagatcttgggctcctttgtgct
tatgaggctgttaaaatctgtcatgagaatttctccaaaattgaaggagagtgtgaaatt
taccgtaaaggttatctccagtgtataactatttttgaagaagtaatcaaaataatagaa
gaatccctccatcttgctgataaaaagattttgggggatgactttgactattcaaaggca
gaagatttgggattcatatcaccaaaattacttgaactcattcaacttttcgagtcattt
ggagaatctagtcaggttttgtgccttatttttgttgatagaatcattacagctaaggtg
attgaaagattcataaagaaagttccccagatttctcatctcacagtttcctatttaact
ggaaacactacttcggtggatgctctggctcctaagaggcagaaggagatattggactgt
ttccactctggaaaggtcaatttattatttactactgatgtacttgaggaaggaattcat
gtgcgaaactgctcttgtgtgatacgttttgacctccccaaaacagttcgtagttatgtc
caatcacgtggaagatctaggcaggctaactcgcagtatgttttgatgttggagaggggg
aacttgaagcaacgaaatcaactctttgacatcattaggagtgagcgatttatgaatgat
gcttctattaaaaaagaccatgaatatagtacaagggcattaattacggagaaaatagat
acatactatgtggaatctactggagcatctgtcactttagattccagtgctagtcttatc
atccaatactgtggaaagctcccacgagataagtactcctgtgcaaagcccagttttgag
tttatgcctgtggaagggggttacaaatgtacgttgatattaccacctaatgcagctatt
caagcagtaactggttctccaggaaaagatattcgtttggcgaggtgtcttgcttgtttt
gaagcttgtaagaagctacatcaaattggtgccttaaatgaccatctggttccattcact
gaagatccttcagatgatgaccatattgtgcaaaacaaagactcgagttctggtgcagga
accacaaaaagaaaagagttacatggaatggccagcattcgtgcattaagtggtgcatgg
ggagacaaactggatggagccaaatttcatgcctataaatttgaattctcatgtaatatt
gttagtgaaatatactccgggtttgttcttttgattgagtcaaagcttgatgatgatgtg
ggaaatgtagaattagatctttatttagtctcaaagatagttagagcttccgtgtcttca
tgtgggcaagttgatttaaatgctgaacagatgatgaaagcaaaatgcttccatgagctc
tttttcaacggcttgtttggaagattggtttctaggtccaaatcagctggagggaaaagt
gaatttttacttcagaaagacacaaaatcactgtggaattcaaaactcttatatttgctt
ctaccacttgagaaattgaatgatacatgtggggaatctttgcaaataaattggtttgga
atcaattcttgtgctgctgctattgaatttttaaggagaaaattttctttggtcactaaa
gattgtggtgataatggcacaatcacaactcctcctgatacaaggtcatcagagatggaa
tgtgaaggaacaaacagtattcactttgctaattgtgtgctgggcgttaataatataaaa
gacacgatagttttggccattcacaccgggaaaatatattgtattcttgagattgttcgt
aacctatcccctgaaagtcccttcgatggaaacaaagaaaaatcaaaggaattcataacc
ttctcggattattacagtgaaaggtatgggattacactgaaacatccaggacaatctttg
ttacgtttgaagcaaagtcataatccacacaatcttctttttaacttctacggagatgca
cgagacaagtcatcacaaaagggccctgcaacctcaaaaatgccagcacatgttcacatt
ccacctgagcttctatatgttcttaatgttaaaagagatgtattgaagtcaatgtacttg
ctgccatctctgatgtaccgcattgaatcttttatgttatccagtcagcttagagaagaa
atagatggtcaaactagcaagtccaacatacctagctcactgattctagaagcactcacc
actttgagatgtaatgaaaaattttcaatggaacgtctcgagttgctaggagattctgtt
ttgaagtatgtggttagctgtcacctatttctaaaatatcctaagaaacacgaaggacaa
ttatctgccagacgatcatggactatttgtaattcaaccctacataaactggggacagat
cgcaaattacagggatatattcgagactctgcatttgaaccacgccgttgggttgctcct
ggacaacattctatatacacttttcattgtggttgtgggttagaaacctcagaagtgcct
ttagatggaaaattccatactgaagatccaaaagttgtggttgggaagttttgtgacagg
ggtcaccgctggatgtgctcgaagactatttctgactgtgttgaagctttgataggagca
tactatgtgggtggtggactctttgcgtcacttaatgtgatgaaatggcttggaattggt
gctgaacttgaactatccttggttgatgaagcaatcactgctgcatctctgcatacaagt
gtgccaaaagaaagtattgctagccttgaaaagaaaatagggtatgaattttctgtcaag
ggactcttactggaggcaatcacacatttgtctgagaaagaagttgggactggttgttat
gagcggcttgaatttctcggagactcggtgttggacctgcttatcacatggcatctttat
gaaagtcacacagttgttgatccaggggtgttgactgacttacgctctgcttctgtcaat
aatgacaattttgctcaagttgctgttagacataatcttcaccagcaccttcgacatagc
tctggattgttaatgagtcagatatcagaatatgtgaaggtcaattctgaatcagatccc
aaatcactcccaagcgttagagctcccaaggcacttggagatctagtggaaagtattgct
ggggctatactaattgattccaagctcagtcttgatgaagtctggaaggctttctatcct
ttattgtctcccattgttactcctgataaacttgaattgcctccatttcgtgaattaaat
gaattatgtgattcacttgggtattttgtaaaagtaaaagaaaattctgaaaagaaggga
agcacaacacatgttgaggttagtgtacagctgccaaacgccttattggctaaagtagca
tatggggctaataaaaaaactgcaaaaggagaagctgcttttcatttactgaaggaactt
gagaagaggggaatctcacatggtagttttgtgtccaagggaaaaagagataatcctgac
catatcaaagattcatcgactaaaaggcccagcttggatgaaactaacttaactgcaatt
aatatatcaattaatatgaagaagggaggaccacggaccacactatttgaagtgtgtaag
aaactacagtggccagtgccttcatttgattcaacagaatataaagacagatctttattt
aaatcctgcgaagccctggaaggaagcaagggacttaactgttttgtgtcgaaaattacc
ttgtgcatgcctaattatggtaatatagaatgcaaaggagaagccagaggtgacaagaag
agctcctgcgactccgctgcagttgaaatgcttcttgagctacaaagactcggaaaagtt
tcgattgattctccactttcttcttag
DBGET
integrated database retrieval system
