KEGG   Cajanus cajan (pigeon pea): 109817725
Entry
109817725         CDS       T04868                                 
Name
(RefSeq) exosome complex component RRP42
  KO
K12589  exosome complex component RRP42
Organism
ccaj  Cajanus cajan (pigeon pea)
Pathway
ccaj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccaj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109817725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccaj03019]
    109817725
Messenger RNA biogenesis [BR:ccaj03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     109817725
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     109817725
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 109817725
NCBI-ProteinID: XP_020238645
LinkDB
Position
Unknown
AA seq 286 aa
MVGLSVGEQHFIQGGIAQDLRCDGRKRLTYRPISVETGVIPQANGSARVRMGATDVIASV
KPELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDELAAELSIALQRCLLGGKSGAGA
GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGTSND
EQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRHGHIC
GITKRGGAGLDPSIILDMISVAKHVSEQVINKLDSEIASAEAEEES
NT seq 861 nt   +upstreamnt  +downstreamnt
atggtgggtttatctgtaggagaacaacatttcatccaaggtggcattgctcaagatctt
cgttgtgatggtagaaagagattgacatatcgaccaatctctgttgaaactggagtgatt
ccccaggcaaatggttcagcaagagtcagaatgggtgccacagatgtcattgccagtgtt
aagcctgaacttggaaagccaagcttgttgcaacctgacaaaggaaaagtctctatatat
attgattgcagttcgactgcagagccagcttttgagggtagaggtggtgatgagttggca
gcagaactgtcaattgctcttcaacgctgtctcttaggtggtaaaagtggagcaggtgct
ggaattgatctctcctcgcttattgttgtcgaagggaaaatttgttgggatctatatatt
gatgggcttgttgttagttcagatggaaatttgttggatgctttaggtgctgccattaag
gctgctttaagcaatacgggtattccaagagtccaagttgctgctggaacatcaaatgat
gagcaaccagaagttgacataagcgacgaggagtttcttcagtttgacacatctggagtc
cctgtcatagttacactgactaaggttgggaggcactatattgtggatgcaacatcagaa
gaggaatcacaaatgagctctgctgtttctatctctgttaataggcatgggcacatctgt
ggtataaccaaacgaggaggtgcagggctggatccaagcatcattcttgatatgatatct
gtggctaagcatgtaagcgagcaagtaataaacaaattggattcagaaatagcttctgct
gaagcagaagaggagtcatga

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