Cajanus cajan (pigeon pea): 109819017
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Entry
109819017 CDS
T04868
Name
(RefSeq) serine/arginine-rich splicing factor RS40 isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
ccaj
Cajanus cajan (pigeon pea)
Pathway
ccaj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccaj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109819017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccaj03041
]
109819017
Spliceosome [BR:
ccaj03041
]
Common components
Common spliceosomal components
SR proteins
109819017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RNA_bind
RRM_5
RRM_Nup35
DUF2129
Motif
Other DBs
NCBI-GeneID:
109819017
NCBI-ProteinID:
XP_020240182
LinkDB
All DBs
Position
2:complement(30671877..30676061)
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AA seq
375 aa
AA seq
DB search
MRPIFCGNFEYDARQSELERLFRRYGKVDKVDMKSGFAFIYMEDERDAEAAIRALDRVEF
GRKGRRLRVEWTKHERGVRRPAGSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYG
KIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRGGGYSPER
GRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYQRERGSPDYGRGRDRSRSRSPLRRE
RASPAYGRRSLSPYRREREASDPVRDSSRSPYHKERGRTDHGISPSHSPEGRVRKSPQNG
RSSSRSPRDTGKASPENGHGSGSPDEKGNPSPYNGYGGSPNTMPDGPDPRDSPNYGGPES
PMHERYRSQSPPAEE
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgaggcctattttctgtggaaattttgaatatgatgcccggcagtcagagttggagcgg
ctttttagacgatatgggaaggttgacaaggtggatatgaagtctggatttgcttttatc
tatatggaagacgagagagatgctgaggctgctattcgtgctcttgatcgggtagaattt
ggtcggaagggacgcagactccgtgtggaatggacaaagcatgaacggggtgttagaagg
cctgctggttcaagaagatcttcagctaatgggaggccatcaaagaccttgtttgtgatt
aattttgatacataccataccagaacaagggacttggagaggcactttgaaccatatggt
aagatagtcagtgtgagaatcagaaggaattttgcatttgttcagtatgaatcagaggat
gatgctagcagagcattggaagctacaaatatgagcaagttactggatcgagttatttca
gttgaatttgctgtcaaagatgatgatgacaggagaggtggtggttatagccctgagaga
ggccgtgatcgtcaacgtgatagaagccgtgatggaaggcgatcacctagtccttatcgt
agagaaaggggtagtcctgattatggccgtgggcccagcccatatcagagagagaggggc
agccctgactatggtcgtggccgtgaccgtagccgtagcagaagtccccttcggagagag
cgagctagccctgcatatgggcgtagaagccttagtccatatagaagagagagggaggct
tcggaccctgttcgtgactccagccgtagtccttatcacaaagagcgtgggagaactgac
catggaatttctccttcccacagtcctgaaggaagagtgaggaaaagtcctcaaaatggt
cgcagttctagccgcagtccgcgtgatactgggaaggctagccctgaaaacggacatggc
tccggaagccctgatgagaaagggaatcctagcccttacaatggttatggagggagccca
aataccatgcctgacggccctgatcccagggatagtcccaactatggtggcccggaaagt
cccatgcatgaaagataccgcagccagtcacccccagcagaagaatga
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