Clostridium caseinilyticum: ACFLKC_09060
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Entry
ACFLKC_09060 CDS
T11275
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ccak Clostridium caseinilyticum
Brite
KEGG Orthology (KO) [BR:
ccak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ccak03016
]
ACFLKC_09060
Enzymes [BR:
ccak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACFLKC_09060
Transfer RNA biogenesis [BR:
ccak03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACFLKC_09060
Prokaryotic type
tRNA splicing ligases
ACFLKC_09060
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
ELFV_dehydrog_N
Motif
Other DBs
NCBI-ProteinID:
XLQ83103
LinkDB
All DBs
Position
complement(2010080..2011276)
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AA seq
398 aa
AA seq
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MQEIKGRYNFAKVFTDNIDSETISQLYTLLNQMFVMDSRIRIMPDTHSGKGCVIGTTMTI
KDKVVPNLVGVDIGCGVDVIKIDSKKIDFEKLDEVIRRTIPYGMNIHEKAHRFSKDINLE
ELKCIKHVNQSRAINSIGTLGGGNHFIEVDVDNERSYYVLIHSGSRYLGGQVAKYYQDLA
VKNFNRDKIIKEKEYIIQQLKSQGKTTEIQKALKKLKHPPQNPKDLMYVDGANFNDYIHD
MSIIQNYAKINRKAMADIILSNMGWKIEEYFSTIHNYIDIENMILRKGAVSAQKDEKLVI
PINMKDGALICIGKGNEDWNFSAPHGAGRIFSRKEAKKVLSLEEFKIKMNGVWTSCVSQY
TLDEAPMVYKPIDEIMKNIIDTVDIVDVIKPVYNFKAN
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaattaaaggaagatataattttgcaaaggtatttactgataacatagatagt
gaaactatttctcaattatacactttattaaatcaaatgtttgttatggatagcagaata
agaattatgccagacactcatagtggaaagggatgcgttataggtactactatgactatt
aaagataaggttgtgcctaatttagtcggtgttgatattgggtgtggggtagatgttata
aaaatagatagtaaaaaaatagatttcgaaaaattagatgaggttataagaagaactata
ccctatggaatgaatatccatgagaaagcacatagattttcaaaagatataaatttagaa
gaactaaaatgtattaaacatgttaatcaaagtagagctataaatagtattggaacatta
ggtggaggaaatcattttattgaagtggatgttgataatgaaagatcctattatgttctt
atacacagtggaagtagatatcttggaggacaagttgctaaatattatcaagatttagca
gttaaaaattttaatagagataaaattataaaagaaaaagaatatataatacagcagcta
aaatcacaaggaaaaactactgaaatacaaaaagcattaaaaaagttgaagcatccacca
caaaatcctaaagatcttatgtatgttgatggagctaattttaatgattatatccacgac
atgagtataattcaaaactatgccaaaataaataggaaggctatggcagatataatatta
agtaatatgggctggaaaatagaagaatacttttcaactatacacaattatattgatata
gaaaatatgattttaagaaaaggtgcagtttcagcacaaaaagatgaaaaattagtaata
cctataaatatgaaggatggagctttgatttgtatagggaaaggaaatgaggattggaat
ttttcagcacctcatggagctggaaggatattttctagaaaagaagcaaaaaaagtactt
tcactagaagaatttaaaatcaaaatgaatggagtatggacatcatgtgtttctcaatat
actttagatgaagcaccaatggtatataaacctatagatgaaataatgaaaaatataata
gatactgtagatattgtggatgttataaagcctgtctataatttcaaagctaattaa
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