Clostridium caseinilyticum: ACFLKC_16305
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Entry
ACFLKC_16305 CDS
T11275
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
ccak Clostridium caseinilyticum
Pathway
ccak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACFLKC_16305 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccak03400
]
ACFLKC_16305 (uvrB)
DNA repair and recombination proteins [BR:
ccak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACFLKC_16305 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACFLKC_16305 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_30
AAA_22
IFT46_B_C
T2SSE
Kinesin
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
XLQ84439
LinkDB
All DBs
Position
complement(3575893..3577881)
Genome browser
AA seq
662 aa
AA seq
DB search
MNQFKVISKFNPTGDQPKAIKSIAKSIEKGEKFQTLIGVTGSGKTFTMANIIDKVQKPTL
VLAHNKTLAAQLCSEFREFFPNSAVEYFVSYYDYYQPEAYVAQSDTYIEKDASINDEIDK
LRHSATAALFERKDVIIVASVSCIYGLGNPEEYKKLTISLREGMEKDRDEIIKKLVEIQY
ERNDIDFSRGTFRVKGDVLDIFPAASSNKGIRVEFFGDEIDRIKEFDVLTGETIARLKHT
SIFPASHFATSKDKLEIAIKSIEEELEERVKELVSQDKILEAQRLKQRTNFDIEMMREVG
YCTGIENYSRVLDGRAKGTPPQTLLDYFPQDFLLFIDESHVTLPQVKAMQAGDKSRKDSL
VEYGFRLPCAYDNRPLTFNEFENKLNQVVFVSATPAKYELEQSTNIAEQVIRPTGLLDPE
IIVKPVKGQIDDLYTNIQETIKNGFRILVTTLTKKMAEDLTDYLKDMGVKTRYLHSDIDT
IERMKIIHDLRKGEFHVLVGINLLREGLDIPEVALVTILDADKEGFLRSETSLIQTVGRA
ARNSESKVIMYGDVITKSMEKTIKETNRRRKIQMEYNKKHGITPQTIIKDIREVIQISDI
AEEKAEYDTLSEALKSYNNDIDKLMEQYEKEMKEAAQNLQFEKAAHLRDLIYKLKKDKQT
EI
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagtttaaggtaatttcaaaatttaatcctacaggagatcaacctaaagccata
aaatctattgctaaaagcatagaaaagggagaaaaatttcaaactttaataggtgtaaca
ggatcaggaaaaacttttactatggcaaatattatagataaagttcaaaaacctacttta
gttttagcacataataaaacattagcagctcaattatgttcagaatttagagagtttttc
ccgaatagtgcagtagaatactttgtgtcttattatgattattatcaacctgaagcctat
gtggctcaaagtgatacgtacatagaaaaggatgcatctataaatgatgagatagataaa
ttaagacattcagctacagcagctttatttgaaagaaaagatgtaataattgttgcttct
gtatcttgtatatatggtttaggtaatccagaagagtataaaaaattaactatatcatta
agagaaggcatggaaaaggatagagatgaaataattaaaaaattagttgaaatacaatat
gaaagaaatgacatagacttttctaggggtacctttagagtaaagggagacgttttagat
attttccctgctgcatctagcaataaggggataagagtagaattctttggtgatgaaata
gatagaataaaagaatttgatgttttaacaggagaaactatagctaggttaaagcataca
tctatatttccagcatcacactttgcaacttcaaaggataaattagagattgctataaaa
agtatagaagaagaactagaagaaagagtgaaagaattagtatctcaagataaaatatta
gaagctcaaagattgaaacaaagaactaactttgatatagagatgatgagggaagttgga
tactgtacaggcattgaaaattattcaagagtattagatggaagagcgaaaggaacacca
cctcaaactcttttagattatttcccacaggattttcttctatttatagatgaaagccat
gtaactttgccacaggtaaaagctatgcaggcaggagataaatctagaaaagattcttta
gttgaatatggatttagattgccttgtgcttatgataataggccacttacttttaatgaa
tttgagaataaattgaatcaagtagtttttgtaagtgctacacctgcaaaatatgagtta
gaacagtcaactaatatagcggagcaagtaataagacctacaggacttttggatccagaa
ataattgttaaaccagtaaaagggcaaatagatgatttatatactaatatacaagaaact
attaaaaatgggtttagaattttagtaactacattgacaaaaaaaatggcagaggactta
acggattatttaaaagatatgggggttaaaactagatacttgcattcagatatagacact
atagaaagaatgaaaataatacatgaccttagaaaaggagaatttcatgttttagttgga
ataaacttattaagagaaggattggatataccagaagtagctttggttacaatattagat
gcagataaagagggatttttaagatctgaaacatctcttatacagactgttggaagagct
gcgagaaattctgaaagtaaggtaattatgtatggagacgttataactaaatccatggaa
aaaaccataaaagagactaatagaagaagaaaaatacaaatggaatataataaaaagcat
ggcattactcctcaaactataataaaggatataagagaagtaattcaaataagcgatata
gcagaagaaaaagcagaatatgatactttaagtgaagcattaaaatcttataataatgat
atagataaattgatggaacaatacgaaaaagaaatgaaagaagcagcacaaaatttacag
tttgaaaaagcggctcatttgagagatttaatatacaaattaaaaaaagataaacaaaca
gaaatttaa
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