Ceratina calcarata (carpenter bee): 108623733
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Entry
108623733 CDS
T06061
Name
(RefSeq) ATP-dependent RNA helicase Ddx1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ccal
Ceratina calcarata (carpenter bee)
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccal03041
]
108623733
03016 Transfer RNA biogenesis [BR:
ccal03016
]
108623733
Enzymes [BR:
ccal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108623733
Spliceosome [BR:
ccal03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108623733
Transfer RNA biogenesis [BR:
ccal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
108623733
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108623733
NCBI-ProteinID:
XP_017877954
UniProt:
A0AAJ7N5J4
LinkDB
All DBs
Position
Unknown
AA seq
733 aa
AA seq
DB search
MTAFEEMGVLPEIGKAVDEMEWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPV
LQIVWETLKDLESGKTGNAPKTQAQHSKHWSLSLFDRGRALAVTPDGLRCQSREQKEWHG
CRANKGIQGKEKYFFEAIVTDEGLCRVGWSTSQAVLDLGTDKFGFGFGGTGKKSNAKQFD
SYGEAFGMHDVIGCLLDLSKGEIRFTKNGVDLGVAFTLNAQQKSQTFYPAVVLKNAEMSF
NFGAQPFKYPPPSDYVAVASAPKEVVRENPINSNQGQSRDDGKPKCNAPQAIIIEPSREL
AEQTYSQIQKFKKHLKDPTIKDLLVIGGVSVKDQIAALNSGVDIVVGTPGRLEDLIQGGY
LALTHCRFFILDEADGLLKQGYTQLIERLHQQIPKITSDGKRLQMIVCSATLHAFEVKKM
AERLMHFPTWVDLKGEDAVPETVHHVVVMIDPQQDKSWHNLRHHIETDGVHSRDNVRPGS
NNPETLSEAVKILKAEYCIRAIKEHNMDRAIIFCRTKLDCDNLERYLKQSDGKQFSCVCL
HGDRKPAERKSNLEKFKRADVKFLICTDVAARGLDISGLPFMINITLPDEKSNYVHRIGR
VGRAERMGLAISLVSKVPEKVWYHGEWCTSRGRNCSNTNLTDKGGCCIWYNEPNYLADIE
DHLNITIQQVDPDMKVPMNDFDGKVVYGEKKAAMGSNYQNHSEEMMPFVNVLSLLESNTQ
LLYLKRHIAKAVK
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgttcgaagaaatgggtgttttacccgaaatcgggaaagccgtcgatgaaatg
gagtggacattgccaactgatgtccaagcagaggcgatcccactgattttgggtggcgga
gatgtcttgatggctgcagagactggcagtgggaagacaggcgctttttgcctgccagtt
ctgcaaattgtatgggaaaccttgaaagatctcgagtctggtaaaacaggcaatgctccc
aagactcaggctcaacattctaagcattggtcgctgagtttatttgacagaggcagagca
ctggctgtaactcctgatggtctaaggtgccaaagtcgtgagcaaaaggaatggcatggc
tgtagggcaaacaaggggatccaagggaaagagaaatacttctttgaagctatagtaact
gacgagggattatgtcgcgtgggctggtccacgtctcaagccgtgttggacttaggaacg
gataaatttgggtttggcttcggtggcactggtaaaaaatcgaatgccaaacagttcgac
agttatggagaggcatttggaatgcacgatgtaattggatgcctcttagacttgtcaaag
ggtgaaatcagattcactaaaaacggtgtagatctaggtgtggcattcaccctaaatgct
caacagaaatcgcaaacattttatccagccgtggtattgaaaaatgcggaaatgtcgttc
aacttcggtgcacaaccatttaaatatccaccgccgagcgactacgtagccgtcgcgtcg
gcccctaaggaagtcgtgagagaaaaccccataaatagtaatcagggtcagagtagagat
gatggaaagccaaaatgcaatgcccctcaagctataataatcgagccttctagagaactc
gctgaacaaacatacagtcaaattcagaagttcaaaaaacatttgaaagatcccacgatc
aaggatctattagtaattggtggtgtcagcgtgaaggatcaaattgctgcgttaaattcc
ggtgtggacatagtggtcggaacgcctggtcgtttagaagacttgatacaaggcggatac
ttggctctgactcattgcaggttctttatcttggacgaagctgatggtctgttgaaacag
ggatacacgcaattgatcgaacgtttgcatcaacaaataccaaagatcacgtcggatgga
aaaagattgcaaatgatcgtttgttcggcaacgttacacgcgtttgaagtcaaaaagatg
gctgaacgtttgatgcattttccaacgtgggtagatttgaagggtgaagacgctgtgcct
gaaacggtgcaccacgtcgtcgtgatgatagacccgcagcaggacaagtcttggcacaat
ctgagacaccacatcgagaccgatggcgtccatagtagagataacgtgagacccgggagt
aataatcctgaaaccctttcggaggctgtgaaaatcctaaaagccgaatattgtattcgc
gctatcaaggagcacaacatggacagagctataattttctgcagaactaaattagattgc
gacaatctggaacgatatttgaaacaatctgatggcaagcaattttcttgcgtgtgtctg
cacggcgaccgcaaacctgcggaacgtaaatctaacttggagaaattcaaacgagcagac
gtcaagttcttgatctgtaccgacgtcgcggccagaggtttagacattagcggattgcct
ttcatgatcaatataacactgcccgacgagaaatcgaattacgttcatcgcatcggtaga
gtgggtcgagccgaacgaatgggtctggccatttcgttggtcagtaaagttcctgagaaa
gtgtggtatcacggtgaatggtgtacctcccgtggaaggaactgttccaataccaatctc
accgacaagggcggatgttgcatttggtacaacgagccgaactatctagctgacatcgag
gatcacttgaacattacaattcagcaagtggacccggacatgaaagtgccgatgaacgac
tttgacgggaaagttgtgtacggagaaaagaaagcggcgatgggctcgaactatcagaat
catagcgaggaaatgatgcctttcgtgaacgtgttatcgttgttggaatcgaatacgcaa
ctcctgtacttgaagaggcacattgccaaagcggtgaagtga
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