Ceratina calcarata (carpenter bee): 108624038
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Entry
108624038 CDS
T06061
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03022
Basal transcription factors
ccal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108624038
09124 Replication and repair
03420 Nucleotide excision repair
108624038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccal03021
]
108624038
03400 DNA repair and recombination proteins [BR:
ccal03400
]
108624038
Enzymes [BR:
ccal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
108624038
Transcription machinery [BR:
ccal03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108624038
DNA repair and recombination proteins [BR:
ccal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108624038
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
TniB
Motif
Other DBs
NCBI-GeneID:
108624038
NCBI-ProteinID:
XP_017878484
UniProt:
A0AAJ7IWB3
LinkDB
All DBs
Position
Unknown
AA seq
813 aa
AA seq
DB search
MKRYLCGRVLSNHVHSSFDSACYSSVHIADRGKWKKRKEDPEEYNDDDPLDDNETEGVPD
AAKNDIEKHDETALEDEFGAKDYRSQMILKPDCASRPLWVAPNGHIFLESFSPVYQHAHD
FLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTHDIIEYLKRLSKTSIPDGIIEFIKL
CTLSYGKVKLVLKHNKYFVESPFPEVLQKLLKDPVIQECRLKKNVEDEKDEIITNVQLKT
KTPQFGTKAVTNVPTGTTKVQETTNDQVPAEVAAVPEDITTFYDKMDKEDEDEEEEHELK
TVSFEVNQEKIEVIQKRCIELEYPLLAEYDFRNDTVNPDINIDLKPSAMLRPYQEKSLRK
MFGNGRARSGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADD
SMICRFTSEAKDKPMGCGILITTYSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTI
PAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQ
CAEVWCPMTPEFYREYLGCKMSKKLLLYVMNPNKFRACQYLIRYHERRGDKTIVFSDNVF
ALKHYAIKMNKPYIYGPTSQSERIQILQNFKFNTKVNTIFVSKVADTSFDLPEANVLVQI
SSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMNYSRKRQRFLVNQGYA
YKVITKLAGMEDEPDLMYSSHEEQGHLLQQVLSASDMDADEERIPGEGPRPIIRKAGNMT
SISGADDAVYYEYKKAPSSSTANKHPLFKKFRT
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgctatctgtgcggaagagtattgtcaaatcatgtacacagttccttcgattct
gcctgctactcttctgttcacatagctgacagaggtaaatggaagaaacgtaaggaagat
ccggaagagtataatgatgatgacccgttagatgataatgaaactgaaggtgtacctgac
gctgcaaaaaatgatattgagaagcacgatgaaactgcattggaagatgaattcggagcg
aaagattatcggtcacaaatgattctgaaacctgattgtgcctcaaggccgctctgggtg
gcaccaaacggtcacatctttttggaatctttctcacctgtgtaccagcatgcgcatgat
tttttaatagctatatcagaacctgtatgtcgtccagaacacatacatgagtataaattg
actgcttattcattgtatgccgctgtcagtgtcggcctgcaaacgcatgacataatagaa
tacttaaaaagacttagcaagactagtattcctgatggaattatagagtttataaaacta
tgtacattgtcgtatggcaaagtaaaattagtattaaagcacaataagtattttgttgaa
tccccatttcctgaagtactacagaagttattgaaggatccagtgatccaagaatgtcga
ttgaagaagaatgtagaagatgagaaggatgaaataattacgaatgttcaattaaaaacg
aagacaccgcagtttggaacaaaagcggtaactaatgttccaaccggaacgaccaaagta
caagaaacgactaatgatcaagttccagccgaagtagctgctgttcctgaagatataact
acgttctatgataaaatggataaggaagacgaggatgaagaggaagaacatgaattaaag
actgttagttttgaagtaaatcaggaaaaaattgaagtgatacagaaaagatgtatagag
ctggaatatcctctattagcagaatatgactttcgtaacgatactgtaaatccagacata
aatatcgatttaaagccatcggctatgctcagaccatatcaggaaaagagtttaagaaaa
atgttcggaaacggacgtgcaagatcaggtgtcatagttttgccttgcggtgccggcaag
agtttagtcggggtaacagcttgctgcacggttcgaaaacgtgcgctggtactatgtaat
tctggagtatcggtagagcaatggaaacagcaatttaaaatgtggtcgaccgcggacgac
tcgatgatttgccgattcacgagcgaagctaaggacaaacccatgggctgcggaatcttg
atcacgacgtactcgatgatcactcatacacagaaacgctcgtgggaagcggaacaaact
atgcgttggctacaggaacaggaatggggaatcatggtcttagatgaggtgcacacaatt
cccgctaaaatgttcagaagggtgttaactatcgttcagtctcactgtaaattgggcttg
actgcaacattgcttcgtgaagatgacaagattgccgatttgaattttcttattggtcct
aaattgtacgaagcaaattggttggaattgcaaaaaaggggcttcatcgcgagggtacaa
tgtgccgaagtttggtgcccgatgacgcctgaattttacagagaatatcttggatgcaag
atgagtaaaaaactgttgctttacgtgatgaatccgaacaaatttcgtgcttgccaatat
ttgattcgatatcacgaaagacgtggcgacaaaaccatcgtcttctcagacaacgtgttt
gccttgaagcactacgccattaaaatgaataaaccgtatatttatgggcccactagtcaa
agcgagcggattcaaatcttgcaaaattttaaattcaatactaaagtgaacacgatattc
gtgagcaaagtagcagatacttctttcgatttaccggaagctaatgtcttagtccaaata
tcctcgcacggcgggtcaagacgccaggaggctcaacgtttaggacgaattttgagagct
aaaaaaggcgctatcgcagaggaatacaatgcatttttctacactctcgtatcgcaagac
acgatggagatgaattattcgaggaagcgtcaacgtttcctcgttaatcagggatatgct
tataaagttattacaaagcttgcaggaatggaggatgagccggatttgatgtattcatct
catgaagagcaaggccatttattgcaacaagttctctccgccagtgacatggacgcagac
gaggagaggatacctggcgaagggccaagaccaattatacgcaaagctggaaacatgact
tcgatatctggggcagacgacgcagtttattacgaatataaaaaggctcctagttcatca
acggctaacaagcatccattgttcaagaaatttagaacataa
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