Ceratina calcarata (carpenter bee): 108624434
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Entry
108624434 CDS
T06061
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03022
Basal transcription factors
ccal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108624434
09124 Replication and repair
03420 Nucleotide excision repair
108624434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccal03021
]
108624434
03400 DNA repair and recombination proteins [BR:
ccal03400
]
108624434
Transcription machinery [BR:
ccal03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108624434
DNA repair and recombination proteins [BR:
ccal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108624434
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Voldacs
Motif
Other DBs
NCBI-GeneID:
108624434
NCBI-ProteinID:
XP_017879211
UniProt:
A0AAJ7N6G1
LinkDB
All DBs
Position
Unknown
AA seq
558 aa
AA seq
DB search
MTTSSEDVLMQVGQVRYKKGDGTLYVMNERIAWMLDHRDTVSVSHKYADIKLQKISPEGK
SKIQLQVVLHDGSSSTFHFVNRNGQEAQIKDRDDVKDLLQQLLPKFKRKVNKELEEKNRM
LQENPALLQLYRDLVITQVISSEEFWTQHAAEYTQAKKSQRQEIGVNSAFLADIKPQTDG
CNGLKYNLTVDVIECIFKTYPAVKRKHQENVPHKMSESDFWTKFFQSHYFHRDRINAGTK
DLFTECAKIDDQELKKDIQSGINDPLVDLTSFEDKTVDEHYGPNKSDKLSGNIVHQSMIK
RFNQHSIMVLKASTAKQSTQSVQPQLNGSTPSASKPTAPSNLDERPKTKKLRIQEKLIYD
DLDTTQDTNTINSAPLNLTHIDRYLHGPVPGYGSTEPTSEELFMTVNQLKKEASGWLTGS
SIPRQLATSLVSPAAAVSALGELTPGGSLMKGFREESLGQLIPKDLEKELRNVYVCTCEL
LRHFWRSFPPTTPQLEEKAVRMHEALRRFHSAKLKPFEDRVQREFSAVSQHLTSHLNQLL
NTAYRKFAVWQQRKMQMR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgactacatcttcagaagatgttcttatgcaagtaggacaagtgcgttataaaaaggga
gatggaactttgtatgtcatgaatgaaagaatagcttggatgcttgatcatagagacaca
gtgtccgtcagtcacaaatatgctgacattaaattgcagaagatatcgccagaaggaaaa
tcaaaaatacagttacaagtcgttctacacgatggttcatcatctacatttcattttgta
aatagaaatggtcaagaggcacagattaaagatcgtgacgacgtgaaagacttacttcaa
cagttattaccgaaatttaaaaggaaagtgaacaaagaactggaagagaaaaataggatg
cttcaagaaaatcctgcgctacttcagttgtacagagatttagttattacgcaagtaatt
tcatctgaagaattttggacgcagcatgctgcagaatatacacaagctaaaaagagtcaa
agacaagaaataggtgtaaatagtgctttcttggccgatataaaaccgcaaaccgacggt
tgcaatggattgaaatataatttaaccgttgatgtaatagagtgtatcttcaagacctat
ccggcagtaaagagaaaacatcaagagaatgtgcctcacaaaatgtcggaatccgatttc
tggacaaagttctttcagtcgcattactttcatcgggatcgtatcaatgcagggaccaag
gacctttttaccgaatgtgccaaaatagacgatcaagaacttaaaaaggatattcagtcg
ggtatcaacgatccgctggtggatttaacttcttttgaagataaaaccgtagacgaacat
tacggtcccaataaatcggacaaactttcgggaaacattgtacatcagagtatgattaaa
agattcaatcagcacagcatcatggtcttaaaggctagcactgccaaacagtccacgcaa
tccgttcagccgcaattaaatggatcaacgccgtcggcgagtaaacctacagcacccagt
aatttagacgaacgaccaaagactaaaaaacttagaatacaagagaaactaatttatgat
gatcttgatactactcaggacacgaacacgattaatagtgcaccgttaaatttaactcat
atagacaggtatttacacggtccagtgccaggatatggcagtactgaaccgacgtctgaa
gaactttttatgacggtaaatcagttaaaaaaagaagctagcggttggctgacgggaagc
agtataccgaggcaattagcaacgtcattagttagtccggctgcggcagtctcagctcta
ggagaattgactcctggtggttctctaatgaaaggctttagagaggagagtcttggacaa
ttaataccaaaggatttagaaaaagaattacgaaacgtatatgtctgtacgtgcgaactt
ttaaggcatttctggcgaagctttccaccgacaactccgcagctcgaggagaaagctgtg
aggatgcacgaagcgttacgcagatttcattctgccaaacttaaacctttcgaagatcgt
gttcaacgagagttctctgctgttagtcaacacttgacgagtcatttaaatcaattgtta
aacacagcatataggaaattcgcagtctggcagcaacgaaagatgcaaatgaggtag
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