Ceratina calcarata (carpenter bee): 108624504
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Entry
108624504 CDS
T06061
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03022
Basal transcription factors
ccal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108624504
09124 Replication and repair
03420 Nucleotide excision repair
108624504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccal03021
]
108624504
03036 Chromosome and associated proteins [BR:
ccal03036
]
108624504
03400 DNA repair and recombination proteins [BR:
ccal03400
]
108624504
Enzymes [BR:
ccal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108624504
Transcription machinery [BR:
ccal03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108624504
Chromosome and associated proteins [BR:
ccal03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
108624504
DNA repair and recombination proteins [BR:
ccal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108624504
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
DEAD
ResIII
nSTAND3
AAA_11
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
108624504
NCBI-ProteinID:
XP_017879363
UniProt:
A0AAJ7IXZ1
LinkDB
All DBs
Position
Unknown
AA seq
759 aa
AA seq
DB search
MKITVDGLLVYFPYDYIYPEQYAYMLELKRGLDAKGHCLLEMPSGTGKTVTLLSLIVAYM
LEHPLDVTKLIYCSRTVPEIEKVTEELKKLIDYYEKEAGGRPKIVGLVLSSRKNMCIHPE
VSREREGKIVDARCHALTASYIRERRNSDDSVPVCNFYEGFDVEGKEQMMPPGIYSIDDL
KEYGKDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSKELSKSSVVVFDEAHNID
NVCIDSMSVKINRRMLEKSSANIQFLEKTVAEMREDDVNKLREEYERLVEGLRDAHVARE
TDVVLANPILPDQVLEEVVPGNIRNAEHFVGFLKRFVEYLKTRLRVQHVVQESPAAFLRD
VRAKVSIERKPLRFCAERLASLLRTMEVTDLTDFSPTIVVTHLATLVSTYTKGFTVIVEP
FDDKTPNVLNPILHFSCLDSSIAMKPIFDRFQSVVITSGTLSPLDMYPKILNFRPVIMSS
FTMTLARPCLLPMIVAKGNDQVAISSRYETREDVAVIRNYGQLLVEFAATVPDGMVCFFT
SYFYMESVVAAWYDQGVVDQLQRHKLLFIETQDSAETSLALIHYIKACENGRGAVLLSVA
RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGIMVFADKRFSRSDKRSKLPKWIQEHLTDNLCNLSTEEAVQISKRW
LRQMAQPFTRENQLGLSLLTREQLEKDEYGKIEEKAQQN
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataaccgtggacggtttgctcgtgtattttccttacgattacatttatccggaa
cagtatgcatacatgcttgagcttaaacgtggcttggatgccaagggacactgtctgttg
gagatgccgtccggcactggcaagactgtcacgcttttgtcactgatcgtggcatacatg
ttggaacatccgttggatgtcaccaaattgatttattgttcccgtacagtaccggagatc
gagaaagttacagaggagttgaaaaagcttatagactactatgagaaagaagctggtggc
agacctaaaatcgttggcttggttctcagttctcggaagaatatgtgcattcatccagaa
gtcagcagggaacgagaaggaaagattgttgacgcacgttgtcatgctctgacggcatcg
tacattcgtgagagacgaaactccgatgactctgtaccagtttgtaatttttatgaagga
ttcgatgtggagggtaaggaacagatgatgccaccggggatatattccattgacgatttg
aaggagtatggcaaggatcgtaattggtgtccatactttctcgcgagatttacgatattg
cacgcgcagatcgtggtttacagttatcattatttgttggatcctaaaatcgcagagacg
gtgtccaaagaactgagcaaaagttccgtcgtggtgttcgacgaggcccacaatatagac
aacgtgtgcatcgattcgatgagcgtcaagatcaacagaagaatgttggagaaaagttcg
gccaatatacaatttctcgaaaagactgtggcagaaatgagggaggacgacgtgaacaaa
ttaagagaagagtacgagagattggtggagggactcagagacgcgcacgttgccagagaa
accgacgtcgtcttggctaatcccattttgccggatcaagtgttggaagaagtggttccc
ggtaatatcaggaacgcggaacacttcgttggtttcttgaaacgattcgtggaatatctg
aagacgcgtttgcgtgtgcagcacgtcgttcaagaatcgcctgctgcatttttaagagac
gtccgcgcgaaagtttcgatagaacgtaaaccgttgaggttttgcgccgaacgattggcg
tctcttttacgcactatggaggtaaccgacttgacggatttttcgccgacgatagtcgtg
acgcatctcgcgacgttggtttctacgtacacgaaaggatttaccgttatagtggaaccg
ttcgatgacaagacgcccaacgttttgaatccgatcctacacttcagttgtttggattca
tcgatcgcgatgaagccgatcttcgataggtttcagtcggtggtgatcacttcgggaacg
ttgtccccgttggatatgtatccgaaaatcttgaatttccgtcctgtcataatgtcgtct
ttcaccatgactctggccagaccttgcctcttgcctatgatcgtggcgaaaggtaacgac
caagtcgcaatctcgtcaaggtacgaaactagggaggacgttgctgttataagaaattat
ggtcagctgttagtcgaattcgcagctaccgtccccgatggcatggtctgtttctttacc
tcgtatttttacatggaatctgtagttgctgcgtggtacgatcaaggtgtagtggatcaa
cttcaaaggcacaaactgttgttcattgagactcaagattctgcggagaccagtttggct
ttgatacactacatcaaagcctgtgagaatggaaggggtgctgtgctcctttccgtggct
cgcggtaaagtatccgaaggagttgattttgatcatcacttgggaagagccgtgttgatg
tttggaatcccttatgtctatacgcaatcacgaatcttaaaagcgcgattggaatatctc
cgcgatcaatttcaaatcagagaaaatgattttttgactttcgatgcgatgagacacgcg
gcacaatgcgttggaagggcaatcagaggaaagaccgactacggtataatggtattcgcg
gataagagattttcaagatcggacaaacgaagtaaattaccaaaatggatacaggaacac
ttgaccgacaatttatgtaatttgtcgacggaggaagctgtacagatcagtaaacgttgg
ttgcgacaaatggcccagccgttcacacgtgaaaaccaattaggattgtctctgttgacg
cgagaacaactcgaaaaggatgaatacggcaagatcgaggaaaaggcgcaacaaaattga
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