Ceratina calcarata (carpenter bee): 108625328
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Entry
108625328 CDS
T06061
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108625328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccal03019
]
108625328
03041 Spliceosome [BR:
ccal03041
]
108625328
Messenger RNA biogenesis [BR:
ccal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108625328
Spliceosome [BR:
ccal03041
]
Complex B
Other components
Prp19-related factors
108625328
Complex C
108625328
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
RPN7
TPR_10
PPR
ARM_TT21_C
DHR-2_Lobe_A
NRDE-2
Motif
Other DBs
NCBI-GeneID:
108625328
NCBI-ProteinID:
XP_017880726
UniProt:
A0AAJ7IZG5
LinkDB
All DBs
Position
Unknown
AA seq
841 aa
AA seq
DB search
MLERKDPDGNSYVFNEEDLPYEEEILRNPYSVKHWQRYIDHLRSTKSSNLNIVYERALKE
LPGSYKLWYNYLRQRVSQLKGRCITDALYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQ
YYITRTRQVFDRALRALPITQHHRIWPLYIEFLKKHDVYETAVRVFRRYLKLAPEDTEEY
IEYLISIGRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKRMEEAAKNPTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRV
RLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVEFGKFYEENGQIADARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNYKEALKLMHRATAMPFRKVAYHDETETVQMRLYKSL
RVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENKYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEHCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATSAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIAVLNDDNT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNASNPPSDVPVDAMRLLDSKTQATDNIAGYKEGIKFV
RGVTEKDGKPESQVNNPDEIDIDIDDVNENEGDAEGDIPVEKQTIPSQVFGSLKTAEAED
D
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgcaaggatccggatggaaactcatacgttttcaacgaagaggatttaccg
tacgaagaagaaatcttgcgaaatccgtattcggtgaaacactggcaacgttacatagac
cacttgaggagtacgaaaagtagtaatctcaacatcgtatacgaacgagcgttgaaggag
cttcctggaagctacaagttatggtacaactacctgcggcagcgcgtgagtcagttgaaa
gggagatgtataacggatgccctttacgaagatgtgaacaacgcgttcgaacgtgctctg
gtcttcatgcacaaaatgcctagaatttggatggattactgtacactaatgacggagcag
tattacatcactcgcactcgtcaagtcttcgacagagcgctcagagctcttcctatcacg
caacaccatcggatatggccgttgtacatagagtttttaaagaagcacgacgtctacgaa
actgctgtcagagttttcaggagatatttgaagctagctccagaagatactgaggaatac
atagagtatttaatatctatcggaaggctcgacgaagcagccgtgaagctcgcacaaatc
gtcaatcaagacgattttgtttctaaacacggcaaatcgaatcatcaactgtggaacgag
ttgtgcgatttgatatcgaagaatccttcgaaaattaagtccctcaacgtggacgcgatt
atcaggggcgggttgagacgttataccgatcagttaggccctttgtggaattcgttggcg
gactattacgttcgcagcggcttattcgagagggcgagagatatttacgaagaagctatc
caaacggtgactaccgtcagggattttacccaagtcttcgatgcatacgcccagttcgaa
gaactgagtctcagcaagcgtatggaagaggcggcgaagaatcctaccgaagatgacgac
atcgacctggaattgagactggcacgattcgaacatctgatggagaggcgattgctcctt
ctgaattctgtcttgctcagacaaaatcctcacaacgtacaagaatggcacaagagagtc
agactttacgaggggcagccgcacgagattattaacacgtatacggaagccgtgcaaacc
gtacagccacaattggccgtaggtaaattgcacactttgtgggtggagttcggcaagttt
tacgaagagaacggccaaatagcagatgcccgagtagtcttcgagaaagcgactcacgtt
ccttacacgaaagtcgacgacctcgcttccgtgtggtgcgagtgggcagaaatggaaatc
agacacgggaattataaagaggcgttgaaactgatgcatcgagccacggctatgccattc
cgtaaagtggcctatcacgacgagacggaaaccgttcaaatgagactgtacaaatctctg
agagtttggtccatgtacgccgacctggaagaaagtttcggcacgttcaagacttgtaaa
gccgtgtacgacaagatcatcgatttgaaaattgcgacaccacaaatcatcattaattac
ggcttgtttttagaagagaacaaatacttcgaagaagctttcagagcttacgagaaaggc
attgctcttttcaagtggccaaacgtgtacgacatatggaacacttatctcactaaattt
ttaaaacgttacggtggtaccaaactggaacgaacgcgagatctgttcgaacagtgtctg
gaacactgcccaccgaagtatgccaaagctctgtacttgctgtatgcaaagttagaagag
gaacatggcttggctagacacgcgatgtcggtatacgaacgagcaacgagcgccgttcta
ccggaagaacgattcgagatgttcaacatatacataaagaaagcggcagatatatacggc
gtgccaaagacgagacagatttacgagaaggctatcgcggtactcaacgacgataacacg
agagagatgtgcttacggttcgcagaaatggagacgaagctgggagaggtcgacagggcc
cgggcgatatacgcgcactgcagtcaaatttgtgacccgagagtgacgtcgaatttctgg
caaatatggaaagagttcgaggtgagacacggtaacgaggacacgatgcgcgagatgctt
cgaatcaagcgcagcgttcaagcgatgtacaatactcaggtgaacatgatgtccgcgcaa
atgttgaacaacgcgtcgaatccaccgtctgacgtgccggtggatgcgatgcgccttttg
gacagcaagacacaggccactgacaacattgccgggtacaaagagggtatcaagttcgtt
cgcggcgtgacggaaaaggatggcaagccggaatctcaggtaaacaatccggacgagata
gacatcgacatcgacgacgtcaacgagaacgaaggagacgcggagggagacatacctgtc
gagaaacaaactataccgtcgcaagtgttcggtagtctgaaaacagccgaggccgaagat
gattaa
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