Ceratina calcarata (carpenter bee): 108625532
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Entry
108625532 CDS
T06061
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ccal
Ceratina calcarata (carpenter bee)
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccal04147
]
108625532
00535 Proteoglycans [BR:
ccal00535
]
108625532
00536 Glycosaminoglycan binding proteins [BR:
ccal00536
]
108625532
Exosome [BR:
ccal04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108625532
Proteoglycans [BR:
ccal00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
108625532
Glycosaminoglycan binding proteins [BR:
ccal00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108625532
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
108625532
NCBI-ProteinID:
XP_026669836
UniProt:
A0AAJ7S1X6
LinkDB
All DBs
Position
Unknown
AA seq
1160 aa
AA seq
DB search
MRPTLQSVILVLFWLARVDADFFGEKKEMDYDLLQAAVALSDDNNMFIDDGLDGFPAFGF
KPGSEVKQPYRLYLPEKLPAEFTLVAMFKPMSFKTSYLFAVLNPFETVVQLGIRISDGPG
TNQNISLIYTNSDLHSHSEEVAKFTVPKLTKKWSKIVIRVSTTDVRLYLNCHEMARQRVT
RIPLELVFDTASTLYIAQAGPHIQERYDGVLQTLKLYSGHPADLVKCTADFNFPDNDLGS
GDANIELIDGSGDIDVNMTDIERDDDEDRSEESNPPPFITPPPPNLDYKGPKGDKGDRGD
KGETVRGPPGPPGPPGQDEGPPGTKGDPGTCTCNATALMASFTMPKMIQGPKGEQGVPGQ
EGKQGQMGLTGAAGPPGERGLEGPQGPKGDKGDVGGQGPEGPQGQKGEPGRDGIPGEKGA
QGPPGPPGKGEFSGYDPSWKPRGIYRTEGITMRPGLPGQKGEAGLPGNPGPKGESGVVGA
KGNKGEPGHKGGKGDHGKEGPRGIQGFKGEPGAPGSPGLPGAPGENGRPAEKGDKGDTGP
EGKPGTPGPPGPPGIPGLSGPGGVDITDTILREKGDKGEAGARGYKGDKGTKGEKGDKGD
SGPAGIPGVNGSQGPQGNKGEPGKDGVPGTQGTFGPKGEKGERGPPGQTAIAGSGTEFIT
IKGEKGAEGKRGRRGRPGPPGPVGPPGKPGAMGEIGLPGWVNTMKGRPGTPGLPGPNGPA
GPKGEKGDPGAPSPYGLSVGIKGDKGDDGFPGIPGVPGRDGQRGPPGPPGPPGQPSEGNY
VPVPGPPGPPGPPGPPGVSLIGQKGEPGIGRSHIFGERDYYGVRQGARTSLDELKALREL
KQLKELKEHLGATSTATRGPVETTTKIVPGAVTFQNTEAMTRMSGVSPVGTLAYIIDEQA
LLVRVNSGWQYIALGSLLPITTPAPPTTSPPPANPPFEASNLINQIPVKADGTGWYPRML
RMAALNEPFTGDMHGVREADYACYRQAKRAGLRGTFRAFLSSRVQNVDSIVRLGDRDLPI
VNIKGDVLFNSWKEMFNGNGAYFSQNPRIYSFNGKNILTDFAWPEKVAWHGSHKLGDRAM
DTYCDAWHSSSSDRYGLGSPLTGGRLLEQVRYSCDNKFAVLCIEVTSETTRRRRSTEDVE
NEEEMSEDDYKEYLDSLMEN
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcgacctacattgcaatcggtgatactcgttctgttctggttggcgcgcgtcgacgcg
gactttttcggcgagaagaaagaaatggactatgatctactgcaggcggccgtggcactg
tcagatgacaataatatgttcatcgacgacggcctcgatggatttccggccttcggtttc
aagcccgggtccgaagttaaacaaccttatcggttatacctgccggagaaattgccagcg
gagttcacgctcgtggcaatgttcaaacccatgtcgttcaagaccagctatctcttcgct
gttctaaatccatttgagaccgtggtgcaactgggcatccgaatttcggacggaccggga
accaatcagaacatttcgctgatctacacgaactcggacctccattcgcactcggaggag
gtggcgaagttcaccgtgccaaagttgacgaagaagtggtcaaagatcgtgatccgggtc
tcgacgacggatgtcagactctatctgaactgtcacgagatggctaggcaacgggtgacc
agaatcccgttggagttggtgttcgacacggccagcacgctgtacatcgcccaggccggg
cctcacatccaggagcgatacgacggtgtactgcaaaccttgaagctctattccggacat
ccggcggatctggtaaaatgcacggccgacttcaacttcccggacaacgatctcgggtca
ggcgatgccaatatcgagctgatcgacggctcgggagacattgacgttaatatgacagac
atcgaacgagacgatgacgaagacagaagcgaggaaagtaatccgccgccattcatcaca
cctccgccgccgaatctggactataaaggaccaaaaggtgataagggtgacaggggagac
aagggagagaccgtcaggggaccaccaggtcctcctggcccacccggtcaagacgagggt
ccgccagggacgaaaggggatcccggcacgtgcacctgcaatgcaacagccctgatggcg
tcctttacgatgccaaagatgatccaaggaccgaaaggagaacaaggagtgccggggcag
gaaggaaaacaaggccagatggggctcacgggtgcagcaggaccgcctggagagagagga
ctagaagggccacaaggtcctaagggtgataaaggagacgtgggtggacagggaccggaa
ggtcctcaaggacaaaaaggagaacctggccgggatgggattccgggagagaaaggtgct
caaggaccgccgggtccccccgggaagggtgaattctctggctatgaccctagttggaaa
ccccggggcatttataggacggagggtatcacgatgaggccaggactcccaggacaaaag
ggcgaggcaggtcttccagggaatccaggaccgaaaggggaatcaggagtcgtcggggcc
aaaggtaacaaaggcgagcccggacacaaaggcgggaagggtgatcacggaaaagaaggt
ccacggggtatacaagggttcaaaggtgaacctggcgcgccgggatccccgggactccct
ggagcaccaggtgagaacggaagaccggcggagaagggcgacaagggagacacgggaccg
gaagggaaacctggtacccctggaccaccaggacctccgggaatacccggattaagcggt
cccggaggagtggatattacagacacaatactgagagaaaaaggcgacaaaggcgaggcc
ggcgcgcgcgggtacaaaggagataaagggacgaaaggcgagaagggagacaaaggtgat
tctggaccagctgggattcctggtgtaaatggcagtcaaggaccgcaaggcaacaaaggc
gagccaggcaaggacggagttccaggcacgcagggcacttttggtccgaagggcgagaaa
ggcgagagaggtccgccaggacaaacggctatagctggctccgggaccgagttcatcacc
atcaagggtgaaaaaggagcggagggcaagaggggaagacgaggccggcctgggccacca
ggtcctgtaggaccaccgggcaagccaggagcaatgggcgaaattggtttacctggatgg
gtgaacaccatgaaaggtcgtcctggaactcccggacttcctggacccaatggaccagcg
gggcccaagggagagaaaggggatcccggcgcgcccagcccttacggactttctgttggc
ataaaaggggataaaggggatgatggttttccgggaattcccggagtacccggaagagac
ggtcagagaggacctccgggaccgcctggtccgccgggacagccgtctgaagggaattac
gttccagtcccgggacctccgggacctccaggaccaccaggacctccgggagtctcatta
attggacagaaaggtgaaccaggaattggcaggagtcacatatttggtgaaagagattac
tacggagttcgacaaggagctagaactagtctggacgaattgaaagctctccgagaacta
aaacaattgaaggaactaaaagaacatttaggtgctacaagcacagcaaccagagggcct
gtagaaaccacgacgaagatcgtgccgggagctgtgactttccaaaacacagaagccatg
acaagaatgtcgggtgtgagtccggttggaacactagcttacatcatagacgaacaagca
ctgctcgttagagtcaacagtggctggcagtacattgcattgggctcgcttttaccaata
actaccccggcaccaccgacgacgtcaccgccaccggcgaatccacctttcgaagcttcc
aacctgatcaaccagatacccgtaaaagcagacggaacagggtggtatccgcgaatgtta
cgaatggctgctttgaacgagccgtttaccggtgacatgcacggcgtacgagaagctgac
tacgcttgttatcgacaagcgaagcgagccggtctgaggggtacgttccgggcattcctc
agttccagagttcagaacgtcgacagtatcgtaagactgggcgaccgcgatctccccatc
gtcaatataaagggagacgttctgttcaattcgtggaaggagatgttcaacggaaatggg
gcgtatttctcgcagaacccgaggatctacagcttcaacggaaagaacatcctcaccgac
tttgcctggccagagaaagtggcgtggcacgggtcgcacaaattgggagaccgggcgatg
gacacgtactgcgacgcctggcattcgagcagctcggatcgttacggattaggatcaccg
ttaacaggcggtcgtctattggaacaagttcgttattcctgtgacaacaagttcgcggtg
ctctgtatagaagtaaccagcgagaccacgagaaggcggagaagcacggaagatgtggag
aacgaggaggagatgtcggaagacgattacaaggagtacttggattctctaatggaaaat
taa
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